Rhagoletis zephyria (snowberry fruit fly): 108361116
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Entry
108361116 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108361116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108361116
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108361116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_8
TPR_1
TPR_14
TPR_16
TPR_19
TPR_12
TPR_11
TPR_CcmH_CycH
TPR_7
TPR_17
ARM_TT21_C
ANAPC3
TPR_Slam
PPTA
RNPP_C
Motif
Other DBs
NCBI-GeneID:
108361116
NCBI-ProteinID:
XP_017469146
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
MFLQNALYYFFNVNLLHRFDENVDVIATLARCYFKIGEMDKLKTLHLNTVQQAEFLMAPL
AGIDALTNSTDSESFDTLFLLSKLHLQLANYAAALNCMLKATRLRPYYAECFHYLGKIYY
GTKDIVRSRKCFEKCVNLNPICESAVNNLSAIYQQLGEEDFNVALLLNTLKHMKCEDSKH
IQYKLGLHYFHVNKWDDAIQSFRTAIKLDNSCMNYWESLGDAYAERGSYNSAIRVFQKIL
EMNPSNIYAKLQIALIKSTVRMYTEAIAEFDDLLRGHPDYLPGLKGAAEAHIGLANNLKL
EHLYGRCKDHLQLAVNHLQSAFLTLNGQSMFWLWRLTANVFXQTALMPNSLAYLEVSGKL
AKLEDETAIWQRKDLFTLAARFYTCAIKLKANTFIWYEFALCCYYSAIYIPDEATSHLAL
AIKASKLAVNEQSDRWQNWNLLGVINLHKEINQLPLAQHCFIQALTLERKSYTTWTNLGV
LYLKLNEIKLANQAFQRAQQSSPIYGNAWIGQAMIAESIGEEEEALDLFRHCQQFEYHPE
SSLGYAHWVCMVLTDAEKCKIPHYRHAIDSMYADVVALDAINWHVINEEKDATSAALSFQ
GFLSLRQRHYRPAVRAYLQAVKCTTPSAERDKLLTSLGYLYLKLNQPNDAIQIFNRVVHS
SLNAIIGLALAFVRAGQHQEAYAVYNSVLKSMADXNEEKAGMILVAMAAMVYSSQGEADT
KTILYQCILLKNSPIQALYSACXLGILHQDNQLTTTILAELKKYENSEAYSAHISYLTAQ
YYVAIKQTRKGLTYLLSRLHVFPSCAELRKVLANFLLDNFSHASQYHLATSQIALSSITL
LHRNKAQKSDCIEDSQLLLIASRALRPVEKXRSLKLIQHAIRLHPQNQNAWLALQEVH
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgtttctccaaaatgccttgtattacttctttaatgtaaacctgctgcatcgattcgat
gaaaacgtagatgttattgccactttagcaagatgttacttcaaaataggcgaaatggac
aaactaaagacattgcatttaaatacagtgcaacaagccgaatttcttatggcgcctctt
gctggaatcgatgctttgacaaactccaccgattctgaatcatttgatacacttttctta
ctctcaaaattacatttacaattggcaaactatgctgccgctttgaattgtatgcttaag
gcaactcgtttacgaccatattacgcagaatgcttccattaccttggtaaaatatactat
ggcacaaaggatatagtgcgctcacgaaaatgttttgaaaaatgtgtaaatttaaacccc
atatgcgagagcgcagtgaataatttaagcgctatttatcagcaactaggtgaagaggat
ttcaacgttgcattgctgcttaatacactcaaacatatgaagtgtgaagattctaaacat
atacagtacaagctcggtttgcattattttcatgttaataagtgggatgatgccatacag
tcgttccgcacagctattaagctcgataacagttgcatgaattattgggaatctctgggt
gacgcttatgcagagcgtggttcttataactctgctatacgagttttccaaaaaatactc
gaaatgaatccaagtaatatttacgctaaactacaaattgcattgattaaatctactgtg
cgaatgtataccgaagctatagcggaattcgatgacttgctacgcggccatcccgattat
ttacctggtttaaagggcgctgctgaggcacatattggtctggcgaacaatttaaagttg
gagcatctatatggacgttgtaaggaccatttgcagttggctgttaatcatttgcaaagc
gcattcttgactttgaacggtcaaagtatgttttggttgtggcgcctaaccgccaatgtg
tttngtcaaacagcactcatgccgaactcattggcatacctggaagtatcagggaaactg
gcaaagttggaagatgaaacagcgatttggcaaaggaaggaccttttcacattagctgca
agattttacacctgcgccattaagttaaaagcaaacacatttatttggtatgaattcgca
ttgtgttgttactactccgcgatctatattcccgatgaagcaacttctcatttggcattg
gctatcaaagcctccaaattggctgtaaatgagcaaagcgaccgttggcaaaattggaat
ttgcttggagtaataaatttgcataaggaaatcaaccaattgcccttagcacagcattgt
ttcattcaggcactgacgcttgaacgtaaatcttatacaacttggacaaatctgggtgtg
ctctacttaaaactgaacgaaataaagcttgctaatcaggcatttcagcgtgctcagcag
tccagtcctatatatggaaatgcgtggattggacaagctatgatcgccgaaagtattggc
gaagaggaggaagctttagatcttttcagacactgccagcagtttgaatatcaccccgag
tcctcactgggatatgcgcactgggtttgcatggtgttaacggatgcggaaaagtgcaaa
ataccacattatcgacatgctatcgatagcatgtatgctgacgtggtggcgttggatgca
attaattggcacgttataaacgaagaaaaagatgcaacttctgccgcactttccttccaa
ggattcttaagtttacggcagcgacattatcgtcctgcagtgagagcataccttcaagct
gtgaagtgcacaacacctagtgctgagcgcgataaattactcacgagcttaggttatctc
tacttgaagttaaatcagcccaatgatgctatacagattttcaatcgagtagtacattca
tcactcaatgccattattggattggctctggcttttgtgcgcgctggccaacatcaggag
gcatatgcagtatataactctgtattaaagagtatggcagatnataacgaggaaaaggcg
ggcatgatattggtagcaatggccgcgatggtgtattcgtcgcaaggcgaagcagatacc
aaaacgattctatatcaatgcatcttgcttaagaactctcccatacaggctctttattct
gcctgtngcctgggtattctgcatcaagataatcaactaacaacaactattctggcggag
ttgaagaagtacgaaaatagcgaagcttattctgcgcatatttcatatttgacggcacaa
tactatgtagctattaaacagactcgcaaaggcctaacatatttactatcacgtctgcac
gttttcccaagctgtgctgaattgcgaaaagttttggcaaattttctgttggataatttc
agccatgcctcacaatatcatttggctacaagccaaattgctctgagctcaattacttta
ttgcatcgtaataaagcacaaaagagcgactgcattgaggactcccaattgttactgatt
gcgagtcgcgcattaagacccgtagaaaaancgcgctccctaaaattgatacagcatgct
atacgtttgcatcctcaaaatcagaatgcttggctggcgctacaggaagttcattaa
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