Rhagoletis zephyria (snowberry fruit fly): 108361620
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Entry
108361620 CDS
T08513
Name
(RefSeq) probable nucleoporin Nup54
KO
K14308
nuclear pore complex protein Nup54
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108361620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108361620
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108361620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
THP2
Motif
Other DBs
NCBI-GeneID:
108361620
NCBI-ProteinID:
XP_017469761
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MSFFGGSTSLGATSTPAKPGGIFSSFGTGSAAAAPAFGTATSTAAPAFGTSAFGTTGFGS
AAPSSAPSLFGGTATAPNTTGFGGFGAATSTAPSFGGFGTTAATSGSGFGGFGATSTTTT
APAFGGFGTQASAFGGFGTGGSTFASSFGKPAAPTVTPGFSGFGGATNFMLGQPQQQVPQ
LSPDEAFAQSIFNVSIYGDERDTIIAKWNYLQALWGTGKSFYSQNAVSVEITPQNYLCRF
KAMGYSRLPGKDNKMGLVALNFNKPVDVKAQQQQIMTSLNSIFGNKPNLAINIESSKEHE
QNKCQLVIYVEERSQMSPNETKRILATEVSSYLNQANMKAQLATLGIAEVLALVLPDEDQ
LKEYLENPPKGIDPRMWRQAKLDNPDKSKFIPVPMIGFNDLKWRTKCQEHETETHALYLK
KVEKDLAELRQRHTAATARIMEHKRKLAELSHNILKIIVKQECTRKIGLALTPEEEALRT
KLENMQALVSAPTQFKGRLSELLSQMRMQRNQYAFSGGSEYAIDKDSEEEMKSFLAMQQK
AMEVLTEVVTKDLKALQIIMEGMPELVRV
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcttcggcggaagcacttcactgggtgcaacaagcacgcccgcaaaacctggt
ggcatattttcgtcgttcggcactggcagtgcggctgctgctccagctttcggcacagcg
acatcaaccgctgcaccggcgtttggtacatccgcttttggcactacaggttttggcagc
gctgcaccttcatctgcaccctctctcttcggtggtactgcaacagctcccaacacaaca
ggattcggaggttttggtgcggcaacatccacagcaccttcattcggcggtttcggaacg
actgccgccactagtggttcgggttttggtggatttggtgccacatcaacaacaacaaca
gctccggcctttggtggattcggtacgcaagcaagtgctttcggtggttttggtaccggc
gggagtacattcgcttcatcttttggtaaacctgccgctccaacggttacacccggattt
agtggcttcggtggcgccacgaacttcatgctaggtcagccgcagcaacaagtgccacag
ttatcaccagatgaagctttcgctcaatccattttcaatgtttcgatttatggtgatgaa
cgtgacaccattattgccaaatggaattacctgcaagctctgtggggtaccggaaaatca
ttttactcacaaaatgccgtttcggtcgaaattacgccccaaaattatttatgccgtttc
aaagcaatgggctatagccgcttaccgggaaaagataataaaatgggattggtcgcgctg
aattttaataaaccggtggatgtaaaagctcaacaacagcaaattatgacctcacttaac
agcatctttggaaataaaccgaacttggctataaatattgagtccagcaaagagcatgaa
cagaataagtgtcagttagtcatatacgtagaggagcgctcccaaatgtcccctaacgaa
acgaaacgtatactcgccaccgaagtttccagctatctcaatcaggcgaacatgaaagca
caattagccactcttggtattgctgaagtgctggcattggttttgcccgacgaagatcaa
cttaaagaatatttagagaatccaccaaagggcattgatccgcgcatgtggcgtcaagcg
aaattggataacccagacaaatctaagttcataccagtaccaatgatcgggttcaatgac
ctcaaatggcgcacaaagtgtcaagagcatgaaacagaaacacatgcgctctacctaaag
aaagtagaaaaggacttggctgaattaaggcaaagacatactgcagcaacagcaagaata
atggagcacaagcgaaaattagcagaattaagtcataatatattaaaaattatcgtaaag
caagagtgcactcgcaaaatcggactggcattaacaccagaagaggaggcgctacgaaca
aagctcgaaaatatgcaagccttagtatcagctccaacacaatttaagggacgtctcagc
gaacttttatcccaaatgcgcatgcaacgcaatcaatatgctttcagcggtggtagtgaa
tatgctatagacaaggatagtgaggaggaaatgaaatcatttttggctatgcagcagaaa
gcgatggaagtactgacagaagtcgtaacaaaggacttgaaagcattacaaattatcatg
gaaggcatgcctgagctggtacgagtttag
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