Rhagoletis zephyria (snowberry fruit fly): 108362869
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Entry
108362869 CDS
T08513
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108362869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108362869
03041 Spliceosome [BR:
rze03041
]
108362869
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108362869
Spliceosome [BR:
rze03041
]
Complex B
Other components
Prp19-related factors
108362869
Complex C
108362869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_2
Suf
Mad3_BUB1_I
TPR_8
TPR_12
TPR_15
TPR_7
ARM_TT21_C
PPR
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
108362869
NCBI-ProteinID:
XP_017471510
LinkDB
All DBs
Position
Unknown
AA seq
873 aa
AA seq
DB search
MTLIDKPLIAVDIEFPEEDVPYEEEILRNAYSVKHWLRYIEHKSKAPNCGVNIVFERALK
ELPGSYKIWYNYLRTRRKQVRGRPLNDPMYDEVNNTFERALVFMHKMPRIWMDYGVFMTA
QCRITRTRHVFDRALRALPITQHHRIWPLYLKFVRRFDIPETALRVYRRYLKLCPDDAEE
YIEYLTEAGRLDEAAQQLASVVDNEHFVSKHGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRSGLRRYTDQLGHLWNSLADYYVRSGLFDRARDVYEEAIQTVTTVRDFTQVFDEYAQF
EEVSLNKRMEMVANDPHATEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEGKPHEIINTYTEAVQTVQPKLAAGKLHTLWVEFAKFYESNDQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMEIRQENFEGALRLMQKATAMPKRKVAYHDDTETVQMRLY
RSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGTKLERARDLFEQCLENCPPDHAKYFYLLYAK
LEEEHGLARHAMAVYDRATSAVKPEEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPE
ENMRPMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLNQTSASSATDGGSDAMRLLEAKAAAEQQARQQQTL
KPQTSGNIMFVRGETQGGNAKDKVVNPDEIDIGESDEDEEDDDEADAGGGATNGGNEENV
IAAKRLRIEQQAIPAKVFGSLKKATDEDEQDVD
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgactctaattgacaagccattaattgcggttgatatcgagtttccagaggaagatgta
ccctacgaggaggaaattttgcgcaatgcatactctgtaaaacattggctacgctatatt
gaacataaatccaaagcgcccaattgcggagtgaacattgtatttgagcgcgcactcaag
gagttacccggtagctacaaaatctggtataattatttacgtacacgtcgcaagcaagtg
cgtggtcgcccactcaacgatcccatgtatgatgaagtaaataatacctttgagagagca
ctagtttttatgcataaaatgccacgtatttggatggattatggagtatttatgacggca
caatgtcgcattacgcgtaccaggcacgtgtttgatcgcgctttgcgtgcattgcccatt
actcagcatcatcgcatttggccgctgtacttgaaatttgtacgacgtttcgatataccg
gaaaccgccctacgcgtttacagacgttatttgaagttgtgcccagatgatgcggaagaa
tatattgaatatttaactgaagcggggcggttagatgaagcagcacaacaactggcatcg
gtagtggacaacgagcatttcgtatcgaaacatggcaaatcaaatcatcaattatggaat
gaactgtgcgatttgatttcgaaaaaccctgataaggtgcattcgttgaatgtggacgct
ataatacgcagtgggctcaggaggtacaccgatcagctgggtcacctttggaactccttg
gcagattactacgtgcgatcgggtttgtttgatcgcgcacgtgatgtttatgaagaggca
atacagactgttacaacagtacgtgattttacgcaggttttcgatgagtatgcccaattt
gaagaggtgtcattaaataaacgcatggaaatggtggcaaatgatccacatgcaaccgag
gaagatgacattgatgtagaattacgattggcgcgttttgaatatcttatggagcgccgt
ttattgctattgaatagcgtgttgctgcgtcagaatccacacaatgtgcatgaatggcac
aaacgcgtgaagttatacgaaggcaagccacatgagattattaatacctacaccgaagct
gtgcaaactgtgcaaccaaaattagcagctggaaaattgcatactttgtgggtagaattc
gcgaaattttatgaatcgaatgatcaagtggaggatgcgcgtgttgtttttgaacgcggc
actgaggtggagtatgtaaaagtagaagatttggcagcagtttggtgtgaatgggctgaa
atggagataagacaggagaacttcgagggtgctttacggctaatgcaaaaagctactgcc
atgccaaaacgaaaagttgcctaccatgacgacaccgagacagtgcaaatgcggctatat
cgctctttaaaagtgtggtctatgtacgccgatttagaggaatcctttggcacattcaaa
acctgcaaagctgtctacgatcgtattattgatttgaaaatttgcactcctcaaattatc
atcaactatggtctctttttggaagagcacaactattttgaagaagcttttcgcgcctat
gaaaagggtattgcgcttttcaagtggccaaacgtatacgatatttggaatgcatatttg
acgaaatttctcaaacgttatggcggcacaaagttggagcgtgcacgcgatcttttcgaa
caatgcttggaaaactgtccacccgatcatgctaagtacttttacttactgtatgcgaaa
ttagaagaggagcacggtttagcgcgccatgctatggccgtttacgatcgcgccactagt
gccgtcaagccagaggagatgtttgatatgtacaacattttcattaagaaggcagcagaa
atctatggcctaccgcgtacacgtgaaatctatgagaaggctattgaggcattgcccgaa
gagaacatgcggcctatgtgtgtgcggtttgcagagatggaaactaagcttggcgaaatc
gatcgggcgcgagctatttacgcgcattgttcgcaggtatgtgatccacgcataaccgct
gatttctggcaaacttggaaagaattcgaggtgcgtcatggtaatgaagatacaatgcgt
gaaatgttgcgcatcaaacgttcagtgcaagccacttacaatacgcaagtgaatatgatg
gctgcacaatttcttaatcagacgagcgcaagcagtgcaacagatggcggtagtgatgcg
atgcgtttgcttgaagccaaggcagcagcagagcaacaagcgcgacaacaacaaacactc
aaaccacaaaccagtggaaacattatgtttgtgcgtggcgaaacacaaggaggcaatgca
aaggataaggtggtcaatccggatgaaattgatattggcgagagcgatgaagatgaggaa
gacgatgacgaggctgatgctggtggtggcgcaacaaacggtgggaatgaagaaaatgtt
atagccgcaaaaagattacgcatcgagcagcaggctataccggcaaaggtgtttggcagt
ttgaaaaaagccacagatgaagatgagcaggatgtagattaa
DBGET
integrated database retrieval system
