Rhagoletis zephyria (snowberry fruit fly): 108362920
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Entry
108362920 CDS
T08513
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rze03009
]
108362920
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108362920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT
HEAT_2
HEAT_GCN1
a_DG1_N2
HGD-D
Motif
Other DBs
NCBI-GeneID:
108362920
NCBI-ProteinID:
XP_017471568
LinkDB
All DBs
Position
Unknown
AA seq
2860 aa
AA seq
DB search
MAEILQKTKNSNTFRFKSFADRVGEIDIRRLALYRIGHQNEELPEEENETYFHQTLKKWM
VLNLTDEFGQFSRRCLKVVTLPQLVHQKDFVIDLLLERLSTATNLALQPLLELLYVLARD
LREDFYPYFQRVLDRLICLLNTQDAEQLEWTLVCLAYLFKTLKPYLKKNIGVIFHAILPL
LDEQRYEEHVTNFAVECFSFIARDVRDYRKFLDFVLHTVAREQVDSIAGCGRLLFEIVRG
VKGQFHSVAGDFLQFIFECLVDEQRTKGIDKLQLLCEIVQQSVQELLNFILPQNMSLYWN
KLCDVAQNTMLAGVGACGRLAHILPLFIMAAQHKNGRHLCELDVVVPTILKMLDYCMQSH
SRAYAAETLKLLMQLVSKVLLANNVHLTQLDTSRLMKKALSVQQRDIYAQFVLLIAAHAQ
FELLVLPSVVANFEQHFDEAAFELMARVVLLKRPLAGNAFTLESWQPYMLHIKQQQTLEK
IKQKFTEIDLSGDTLNGKENCLLEQILLLILLPHVVALEKEPLEVKLNTVMGKILEDFSI
QDNLSCQLTIFSLLLETHIHLKFKSTPEFLQRAVQVLLPHATSNLQALGALDQLLTVTAK
LPSEDVLHISELLTPLLSSHSHDVRLLTAHCLQTLHRQTKNAHPYKIFYQAECIEPNVHN
YREQLLYLQQLEPAGELYRAMDKEESLRDVYKQHILRFLLGMLYHNFKFVWEPVQKLIES
YALLMSLADFWNIYKQQLQLTAERIDYTIAVTKDSTATVENVACWRSDVLNEVLPAAQPP
KQTQQQLLNYRNLLWMRLPLFGQMATQKNRDLVGLFLQFVNEEYRARLERRELTWDLTQT
ATGHGHEQLAEAGVLDSDDEADEDIKQNERQRKIGHRNKQRKDQQGFIAKSILQTLQSKL
GVFAAQPNPRSLYREPELYTLYMDLLAGPNAQLQRAALDCVLRYKSKSLTPHKEHLYALV
DEVKLKDELVNFKLDETVSAEERPELMKILLRILYGKMITKGTQRAMSAQSRKSMILRFL
GQCTTEEILWFLEMAFGKYSNYTAEDATLEQIPAQVQSDFDLHAVWSPKKLQSIVNLLEL
IRKEFGGLMKRDFHIYMLKLLTFVGSACNAVLLMPAEKLALVHPKMSVVYKNVRNNALLS
LVNFFAHIEEFDWEASQVRCLSEVYVWPAIEKLPNESIHTPTPLLRLLLQWGEKPQHFDY
LAQRRTNGAEQAQGSPTIFHYVVTLLLNEKAKTAVRRPIMALVERLLASAASDNTFGESA
GISGLHIVKPYIPELLKRLRMNFSTRAAKKAIDKRDLNILSLLTAHVEDADTCDSLLQLL
LPILIAKSQRNANEEVVTQVITTLANLIKQLNTPEMYLRKLAPLFEQTQEVNARKLLCQL
VTDIARKRHKQAMQSKDEALTELATRLQRTARLTCMLNAWDKRWVEQPDYDKRLAALKEI
AQLLDAECNGVDLELSVLVIYNCVYFIKYDKDMGLRDNASEHLRLLLPRLALRFAAAADD
KPNLDYLVGDVTINLLRRLLRDKNDNVRYEGIRLLGEMARQAPSTHPILQDLAPLGDPKD
AEVDFFENLTHLQTHRHGRALLRFCGHAQTIKLRPYTRTLTEFILPLATRYLLQEKHASK
HTLIDAAIETVGVVCQLLPWQQYHALLRYYLTKLRSTQEYQRQCVRIVVHILDAFHFDLT
QAQADAQALQQLRNKLVGEGLNEEVEEEGKKVEKAVKNESVGKASDGDEEDCDGDEKEED
DNEDESVEAELAAELAAVDVESAPTRIDSQSSAPAPCVLSTALLLPAGAAKRVMLTITTI
LIPTLNRAITEQSSYDNKHKLNRKRFSAEREEEEILRVPIALALVKLMQKLPKELMNTSL
PGVFMKVCTFLRSPLKSVRMLTRDILKKIMLTLGASYLSMLMDHLQSLLTRGFQVHVLAV
TVHGVLDALREKFQPADVESCLHNLLDVALNDIFGEINAEKEIDKLTAHTPEAKPSAKSY
LVLHILARNIQDTCLLDLLMPFKEHLTRSHSRKVTLKIQDCFAKIVSGLAENAHISRESL
LIFIYGTVSESITDLLPGTKKRSLTEQEKEYMRRARPDCFIIQPPPRFRSGAINKRVQSN
AQANAHVLIEFGLELLQIVLKRKKLLEVDYQPFLNPLLPLLRDALKSTHVRVVTFALKCF
AAIWNDAYELPALQQQYLCDVVERMFEILKNISTFGAIKQDENLQLVKSSYKAIVALLRK
CTAYELSPEQLQQLVLYVEQNLFEGEHQALSFSLLKALIGRHVEAESLHQIMKRIGDLSV
VSPSDFVRDEARSILVVYIMEYPLKKRVDQIVKFFTVQLRYSLPSGRQSVIKFLHTLIKK
FPLKMLSKRAEFLYISLGPRLVNDDDPGCRKAIAECIELLIMRLEKVDRQRLFDMTLLFF
EPGNNPSVVEMAASLCSRFLNAEKQSFAPRLKLVLPTIVARLTLNNPSAPGRFVRAPTAL
GYDVDEEKLKKRRKYHQHPNDHGGKKFDEIILTEEEVAKTAEERQRAIDHEIIQIQYCLL
KMLDYCSAELLSGNNSELSHVIDELAYESQKLLAHEHAWVRCNAAKIIALILANYDYTRV
GAQLAKEQQASAAYTNGNSNDANVPNFDFIYTNPTYDIKSLVLDLCAQVVPGETQQNMID
EIVKIFLFIGNILRDVPFSVKQEKKEDDAAEQTENADTKQILEKETGTKINLYWLVRNIR
FLINREVTKTPHATAVRSALFTLIEGLITLLSVETLERLAPILLGSLVREMSEEDQNIDT
DLRQQALRVGSRLRKRIGADVYDKLRTHVQTNLMRRRAERKKLLAQEKIHDPLRAAKRKA
ATQERKKSAKRLKADLMRGKVADTKQKLKKRKRKSEEELL
NT seq
8583 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaatactacagaaaactaaaaacagcaacacctttcggtttaaatctttcgcc
gatcgtgtgggtgagattgatatacgtcgcctggcattataccgcattggccatcagaac
gaagaactgcctgaggaagaaaacgagacctattttcatcaaacattgaagaaatggatg
gtactaaacttaacagacgagtttggccaattcagccggaggtgcttgaaggttgtaact
ttgccacaattagtgcatcagaaagattttgtaatagacttgctgctggagcgtttgtcc
acagccaccaacttagcgctgcagccattattggaattgctgtatgtcttggcacgagat
ttacgcgaagacttctacccctattttcaacgtgtactcgatcgtctaatttgtctactg
aacacacaagacgcagaacagctagaatggactttggtctgcttggcatatttattcaag
acgctcaaaccctatttgaaaaagaatattggtgtaatattccatgccattttaccgctt
ctggatgagcagcgctacgaagagcatgtaaccaactttgcggtggaatgtttttctttt
attgctcgagatgtacgggattatcgtaaatttcttgactttgtgctgcacactgttgcg
cgcgaacaagtggacagcatagcaggatgtggacgtttgctttttgaaattgtgcgcggt
gtgaagggacaatttcactcagtggcgggcgattttctacagttcatatttgaatgtcta
gtggatgaacagcgcacaaagggaattgataagctacagctgctatgtgaaattgtgcaa
cagtctgtgcaggagttactcaactttatcttgcctcaaaatatgtcgttgtattggaat
aagctctgtgatgttgcgcaaaatacaatgttagctggtgtgggtgcctgtggtcgttta
gcgcatatattgcctctgttcattatggctgcgcagcataaaaatgggcgtcatttatgc
gaattagacgttgtagtgccgaccatactaaaaatgctcgactactgcatgcaatcgcat
tccagagcgtatgcagcagaaacattaaaattgctgatgcagctagttagcaaagtgtta
ttggccaacaatgttcatctcacgcaactggacacgagcagactgatgaagaaggcgcta
agcgtgcagcaacgcgatatttatgcacaatttgtgctgcttatcgctgcgcatgcccag
tttgagctgctggtattgccatcggtcgttgctaactttgaacagcattttgatgaggcg
gcgtttgagttaatggcccgtgtcgtattgctgaaacggccacttgcaggtaatgcattc
actctggaatcgtggcagccgtatatgctgcacattaaacaacagcagacgctggaaaaa
ataaaacaaaaatttactgaaattgatttaagtggagacaccttgaatgggaaggaaaat
tgcttgctcgagcaaatactgttgctaattttactgccacatgttgttgcgctggagaaa
gagccattagaagtaaagttaaacacagtcatgggaaaaattttggaagattttagtata
caagacaatttgtcatgtcaactgaccatattttcgctcttgctcgagacacacatacat
ctgaaattcaaaagcactcctgaatttcttcaacgcgccgtacaagttttgctaccgcat
gcgacaagtaatcttcaggccctaggcgcactagatcagttgctaacagtaactgcgaag
cttccctccgaagacgttctacatatatcggaacttttaacgcctttacttagctcccat
tcacatgacgtgcggctgctcactgcacactgtctacaaacacttcatcgacaaacgaaa
aacgctcatccttacaagatattctatcaagccgaatgcattgaacccaatgtgcataat
taccgtgagcaactgttatatctgcagcagttggagccggctggtgaactctatcgcgcc
atggacaaagaggagtcactgcgcgatgtatacaaacagcatatattacgctttttactt
ggcatgttgtatcacaacttcaaatttgtctgggagccagtgcaaaaattaatagaatcg
tacgccttgctgatgagcctcgccgatttttggaacatttacaaacaacaattacagctc
acagctgaacgcattgattacacgattgctgtgacaaaagactccacagccacggttgaa
aatgtagcctgctggcgcagcgatgttttgaatgaggtgctgccagcggcacaaccaccg
aaacagacgcaacaacagttgctaaattatcgcaacttactgtggatgcgcctgccccta
tttggtcaaatggcaacgcagaaaaatcgtgatcttgtgggtctgttcctgcagttcgta
aacgaagagtatcgtgcacgtctcgagcgtcgagaactaacttgggatttgacgcaaacg
gcaacaggccacggacatgaacagttggccgaagccggtgttttggatagtgatgacgaa
gcagatgaagatattaagcaaaatgaacgacaacgtaaaatcggccatcgcaacaagcag
cgtaaggaccagcaaggtttcatcgccaaaagcattcttcagacactacagagcaaactt
ggggttttcgctgcgcaaccaaatccgcgctcactttatcgcgaaccagaattgtacacc
ctctatatggacctcctggccggccccaatgcacaattacaacgtgccgcgttggactgt
gttctcagatataaatctaagtctttgaccccacacaaagaacacctttacgcgctagtc
gatgaggtaaaactcaaggatgagctggttaacttcaaattagatgaaacagtgagcgcg
gaggagcggccagaacttatgaaaatattgctacgcatactgtatggcaaaatgatcaca
aaaggtacacagcgtgcgatgagcgcacaatcgcgcaagtccatgattctcagattttta
gggcagtgcacaaccgaagagattttatggttcctagagatggcttttggaaaatattcc
aattatactgcagaggatgcaacactggagcagatacccgcacaagtacagtctgatttc
gatttgcatgctgtttggtcgcccaaaaagctacaaagcatagtcaatttactggagttg
atacggaaggagttcggcggtctaatgaagcgcgacttccatatttacatgctgaaattg
ttaacattcgtggggagtgcatgcaatgcggttttgctaatgcctgcagagaaacttgca
cttgttcaccctaagatgagtgtagtttacaagaacgtgcgcaacaatgcccttctaagt
ttggtgaatttctttgcgcacatcgaagagtttgactgggaagcgtcccaggtgcgctgc
ttaagcgaagtatacgtctggcctgctatcgaaaagctgccaaacgaatcaatacatacg
cccacaccattgctgcgcctgttgttgcagtggggagagaagccgcagcacttcgattac
ttagcacagcgtcgcacaaatggcgctgagcaggcgcaggggtcgccgactattttccat
tacgtcgtgacactgttgttgaatgaaaaagcgaagacagccgtacgccgtccaataatg
gcgcttgtggagcgtcttttagcatccgcggcgtcagacaacacatttggagaaagcgct
ggcattagcggtctacacatcgttaaaccctacattccggagttattaaagcgcttgcgc
atgaactttagcacacgcgccgccaaaaaagcaattgataagcgggatctcaatatactg
tcgctgctgaccgcgcacgtggaggacgcggatacatgcgatagtttgctgcaactgctg
ctgcccatactcattgcgaaatcacagcgaaacgccaatgaggaagttgtaacacaagtt
ataaccactctcgcgaacctcatcaaacaactgaatacgccagagatgtatttgcggaag
ttagcgcccctcttcgagcagacgcaagaggtgaacgcgcgcaaacttctctgccagctt
gttaccgacatcgcgcgcaagcgtcataaacaggccatgcagtccaaagatgaagcgcta
accgagttagcgacgcggctgcagcgtaccgcacgcctgacttgcatgctaaatgcctgg
gacaaacgctgggtagaacagcccgactacgacaagcggctggctgcactcaaagaaatt
gcgcagctcttggatgctgaatgcaatggcgtcgacctggagctgagcgtactcgtcata
tacaactgtgtctactttatcaaatacgacaaggatatgggcttgcgcgacaatgccagc
gaacacttgcgcttgctattgccacgcctcgcactgcgtttcgctgccgccgctgatgac
aagccaaacttggattacttagttggcgatgtgactatcaatttactccggcgtttactg
cgtgacaagaacgacaatgtacgctacgagggtattcgcttgttgggcgaaatggcgcgt
caagcgcccagcacacatcccatactgcaagacttagcgccactcggtgatccgaaggat
gctgaggttgatttcttcgagaatcttacgcatctgcaaactcatcgccatggacgggct
ttgctgagattctgcgggcatgctcaaacgatcaagctccgtccctacacgcgcacgctc
accgagtttatattgcccttggccacgcgctacttgctgcaggagaaacacgctagcaaa
catacactaatagatgccgccatcgaaacggtgggcgttgtatgtcaactgctgccatgg
cagcaatatcatgcgcttttgcgctactatctcaccaagttgcggagtacacaggaatat
cagcgccaatgcgtgcgtattgtggttcacattctcgatgccttccatttcgatttaaca
caagctcaagctgatgcgcaagccttgcaacagttgcgaaataagcttgttggcgaaggg
ctgaacgaggaagtggaagaggaagggaaaaaagtagagaaagcagttaagaacgaatcg
gtaggaaaggcgtctgacggcgacgaggaggattgcgatggagatgagaaggaagaagat
gacaatgaggacgaaagcgtggaagccgagctagctgctgagctggccgccgttgacgta
gaatctgcgccaacgcgcatagactcacaatcatctgcgcccgccccttgtgtactcagt
acagcacttttgttgccagctggagctgccaaacgcgttatgctaaccattaccaccata
ctcatacccacgcttaatcgtgctatcacagagcagagctcctatgataataagcacaaa
ctgaatcgcaagcgttttagtgctgagcgcgaggaggaggagatattgcgcgtgcctatt
gcactagcgcttgtcaaactgatgcaaaagcttcccaaggagctgatgaatactagcttg
ccaggcgttttcatgaaagtatgcacctttttgcgttcgcccttgaagtccgtgcgcatg
cttacgcgtgacattctcaagaaaattatgctcactcttggtgccagctacctttcaatg
ctaatggatcatctgcaatcgctgctaacacgcggcttccaagttcatgtgctcgctgtc
accgtacatggtgtattggatgctctgcgtgagaaattccagcctgccgatgtggagagc
tgtctgcacaacttgctcgatgtagctttaaatgacattttcggtgaaattaatgctgag
aaggaaatcgacaagttaacagcacacacgccggaagcaaaaccaagcgccaaaagctac
ctcgtattgcacatcctggcgcgcaatattcaagacacttgcttgcttgatctacttatg
ccattcaaggagcacctaacgcgctcgcactcgcgcaaagttacgctgaaaatacaggac
tgctttgctaagatcgtcagcggtttggcggagaatgcgcacatctcgcgcgagagtttg
ttgatcttcatttacggcactgtttcggagagcatcactgatctgttgccaggaacgaaa
aagcgttctctcactgaacaggagaaggagtatatgcgtcgcgcacgccccgactgcttc
atcatacagccgccgccgcgctttcgttccggtgccatcaacaagcgtgtgcaatctaac
gcgcaagccaatgcgcatgttctcatagagttcggcctggaactgctgcaaatcgtgttg
aagcgcaagaagctgctagaggtggactatcagccattcttgaatccattgctgccgctg
ttgcgcgatgcgctgaagagcacgcatgtacgcgtggtgacctttgcgctgaaatgcttt
gctgccatatggaatgatgcttacgagttaccggcactacaacaacaatatctgtgcgac
gtggtggagcgtatgtttgaaatattgaagaatatttcgactttcggcgctataaagcaa
gacgaaaacttgcagctggtgaaatcttcttacaaagctattgtggctttattgcgtaaa
tgcaccgcctacgagctgtcaccggagcaactccagcaactggtgctgtatgtagaacaa
aacttgtttgaaggcgaacatcaggcgttatcattttcgttgcttaaagcgctaattggc
aggcacgttgaggctgagtcgttgcaccaaataatgaagcgcattggcgacttgtcggtc
gtttcgccgtccgactttgtacgcgacgaggcgcgcagcatacttgtcgtctacatcatg
gaatatccgctgaagaagcgtgtcgatcagattgtgaaattcttcacagtacagttgcga
tattcgctgccttcgggacgccaatcagttattaaatttctccatacattaatcaagaaa
ttcccgctgaagatgctatcaaagcgggcggagttcctttacatttcacttgggccacgt
ttggtcaacgatgatgatcctggctgccgcaaagcaatcgccgaatgcattgagctgttg
atcatgcgtttggaaaaggtcgatcgacagcgcttattcgacatgacacttctattcttt
gaaccgggcaacaatccatctgtggtggaaatggcagcatcgctgtgctcacgctttcta
aacgctgaaaaacaatcgtttgccccgcggctcaagctggtgcttccaacaattgttgcg
cgactcactctaaataatccgagtgcgcctggaaggtttgtgcgcgcacctacagcgctg
ggatacgacgtggatgaggagaagctcaagaagcgcagaaagtatcatcaacacccgaat
gaccatggtggcaagaaatttgacgaaataattctcacagaggaggaagtagccaaaacg
gctgaggaacgccagcgcgccatcgatcatgaaatcattcaaattcaatattgtctatta
aaaatgttagactattgctctgcggagttactgagtggcaacaatagcgaactcagccat
gtaatcgatgagctggcttatgaatcacagaaactgcttgcgcatgagcacgcatgggtg
cgttgcaacgcagcaaagattattgcactaattttggccaactatgactatacgcgtgtt
ggcgcgcaactagctaaggagcaacaggcatcggcggcttacacaaacggcaatagcaac
gacgcaaatgtgccgaacttcgattttatttataccaatcccacttacgatatcaaatca
ttggtgttggatttgtgcgcgcaagtcgtgccgggcgaaacgcaacaaaatatgatagat
gaaattgttaagatctttctttttataggaaatatattgcgtgacgtgccttttagtgtt
aagcaggagaaaaaggaggatgatgcagcggagcaaacggagaacgctgacacgaaacag
atactagaaaaagagacgggtacaaaaattaatttgtactggctagtacggaatatacgc
tttctgattaaccgggaggtgacgaagaccccccatgccaccgcagtgcgctctgcactt
ttcacgctcatcgaggggctaatcacactgctgagtgttgaaacgctggaaagattggct
cctatactactcggttcgctggttcgcgagatgtctgaagaggatcaaaatattgacact
gatttgcgtcagcaagctctgcgcgtaggcagccgcttgcgcaaacgtattggagctgat
gtttacgacaaattgcgcacacatgtccaaacaaatctgatgcgcaggcgcgctgaacgc
aaaaaattgctcgcccaagagaagatacacgatccactgcgtgcagcgaaacgaaaggct
gctacacaagagcgtaaaaaatcggcaaagcgtttaaaggcggatttgatgcgcggtaaa
gtggcggacacgaagcagaagctgaaaaagcgcaagcgcaaatcagaggaagaattactc
taa
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integrated database retrieval system
