Rhagoletis zephyria (snowberry fruit fly): 108362941
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Entry
108362941 CDS
T08513
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108362941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108362941
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108362941
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
HBS1_N
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
108362941
NCBI-ProteinID:
XP_017471589
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MSRHRIVRAMDYNDEYDSYDDVYGHSVDDDNCISPTDAQQWLYDRARGQHSMSAFIKNNK
DIEEEEEEMGENNVPYGKDRRDSDNFQLPVLNDVDQAKLTSCIDEVRNVVGDQISERRIV
ETSINFGYDITKILDDILNNECDNKAKRHKPINETSTSKKAALQASTSTASKLKTPDRET
VSFAQATPIIKVTAQPLSERDVRRGFEISSPHPQASPAVSGRNTPVDEEANKSLITVKVS
KEQAQRDARKLYSQERGEQKAHFHMIVIGHVDAGKSTLMGHLLVDTGYVSQRVMHKHEQE
SKKMGKQSFMYAWVLDETGEERSRGITMDVGYSRIETTTKVVTLLDAPGHKDFIPNMISG
ATQADVALLVVDASRGEFEAGFEQGGQTREHALLVRSLGVNQLGVVINKLDMVDWSKERF
DEIVSKLKVFLRQAGFKESDVTFIPCSGLSGENLSKPATEPALKAWYKGPHLLSVIDNFK
LPERSIDRPFRMSVSDIYKGTGSGFCISGRIETGVLSVNDRVLVGASREQAQVKGIQIDE
MSQTNAFAGDQVSVTLSGVDMSTVSVGCIICDPQNPIPVTTRFQARILVFNVTVPITIGY
PVLLHHQSLIEPAVLSKLQAQLHKSTGETIKKKPRVLGNNSCALVELETTRPICIERYAD
FKELGRFMLRVGGVTIAAGMVTKIR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccatagaattgtgcgggcaatggattacaatgacgaatacgacagctacgat
gatgtatacggccattccgttgacgatgacaactgcatctcaccgacggacgcgcagcag
tggctatacgacagggctcgtggccaacatagtatgtctgcgtttattaaaaataacaaa
gatatcgaggaggaggaagaggagatgggtgaaaataatgttccatacggaaaggatcgt
cgagactctgataattttcagctgccagtattgaatgatgttgaccaagcaaagcttaca
tcctgcattgatgaagttcgtaatgttgtgggagatcagatatctgagcgaagaatagta
gagacttccataaactttggctatgatataacgaaaatacttgatgacatactaaataac
gaatgtgacaataaagccaagcggcataaaccaataaacgagaccagtacatcaaaaaag
gccgcacttcaagcatctacatccactgcttcaaaactaaaaacacctgatcgcgaaacg
gtatcttttgcacaggccacaccaataataaaagtcacagcgcaaccgttaagtgagcgc
gatgtacgtcgtggctttgaaattagttcacctcatccacaagcatccccagctgtatct
ggaagaaatacgcctgttgatgaagaagccaacaaaagtctaataacggttaaggtatcc
aaagaacaagcacaacgcgatgcacgaaaactatactcacaggaacgtggtgaacaaaaa
gcgcattttcatatgattgttatcggacatgtcgatgcaggcaaaagcacattgatggga
catttattggttgacaccggctacgtctcgcaacgagtcatgcacaagcatgagcaagaa
tctaagaaaatgggcaaacagagtttcatgtacgcctgggtactggatgaaaccggtgaa
gagcgctcaagaggcattaccatggatgttgggtattcccgcattgagacaactacaaag
gtagttacacttctggatgctcctggacacaaagactttataccaaacatgatttcgggt
gctactcaagctgacgtcgcacttcttgtagtggacgcatcgcgtggtgaattcgaagca
ggattcgaacaaggcggtcaaacacgtgaacatgctttacttgtacgctcattaggcgtt
aaccaattgggagttgtcattaacaagctggatatggtcgattggtctaaagagcgtttt
gatgaaattgttagtaaactaaaagtctttctcaggcaagctggttttaaagagtctgac
gttacttttataccatgctctggtctaagcggcgaaaatttgtcaaagccggcaacggag
cccgctttaaaagcctggtacaaaggaccacatttactaagcgttatagataattttaaa
ttgccagagagatcaattgatcgtccatttcgtatgtctgtgtcagatatttataaaggc
actggttctggcttttgtatatcaggccgcatcgagactggtgtgcttagtgttaacgat
cgcgtgctggtaggtgcaagtcgcgaacaggcccaagtcaagggaatacaaatcgacgaa
atgtcgcaaacaaatgcttttgcgggtgatcaagtgtcagtgacactgtccggcgtagat
atgtccaccgtgtctgtaggttgtatcatttgcgacccgcaaaatcccataccagttaca
actcgtttccaggcgcgtattcttgtcttcaacgttaccgtgcccattactattggctat
ccggtgctcttacatcatcagtctctcatcgaaccggcagtgctgagcaaattgcaggcg
caattacataaaagcactggagagactatcaaaaagaaaccacgggtactcggaaataac
tcgtgtgctctagtggaattggaaacaacgcgtccaatctgcatcgaacgatatgcggac
ttcaaggagttgggacgtttcatgttgcgagtgggcggcgtcaccatagctgcggggatg
gttacgaaaatacgttaa
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