Rhagoletis zephyria (snowberry fruit fly): 108362945
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Entry
108362945 CDS
T08513
Name
(RefSeq) histone deacetylase Rpd3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03082
ATP-dependent chromatin remodeling
rze03083
Polycomb repressive complex
rze04213
Longevity regulating pathway - multiple species
rze04330
Notch signaling pathway
rze04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108362945
03083 Polycomb repressive complex
108362945
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108362945
04350 TGF-beta signaling pathway
108362945
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
108362945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rze03036
]
108362945
Enzymes [BR:
rze01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108362945
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
108362945
HDAC complexes
Sin3A-HDAC complex
108362945
BRAF-HDAC complex
108362945
REST complex
108362945
SHIP complex
108362945
MiDAC complex
108362945
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
108362945
Heterochromatin formation proteins
Other heterochromatin formation proteins
108362945
Chromatin remodeling factors
NuRD complex
108362945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
108362945
NCBI-ProteinID:
XP_017471596
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MQAHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAD
EMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAV
KLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDG
VEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDEAYESIFV
PIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYSLPFLMVGGGG
YTIRNVSRCWTYETSVALGVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKI
KNRLFENLRMLPHAPGVQIQAIPEDAINDESEDEDKLNKDERIPQSDKDKRIDPDNEFSD
SEDEGDGGRRDNRSYKGQRKRPRLEKESKTVTENADNKDDKEKMDTNESEETGKSEDAKK
ENNI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcatagcaaaaagcgtgtctgctattattatgatagtgatattggtaattac
tactatggtcagggccatccaatgaagcctcatcgcatacgtatgacccataatttgctt
ttaaattacggtctataccgcaaaatggaaatttatcgaccacacaaagccactgccgac
gaaatgacaaagttccattcggatgagtacgtacgctttttgcgctccatacgtccggac
aatatgtcagaatataacaagcaaatgcagcgattcaatgtcggcgaggattgcccagtt
tttgatggtctctatgagttttgtcagttatccgctgggggttctgtagccgctgctgtc
aaactaaataaacaagcttccgagatttgcataaattggggtggtggcttgcatcatgct
aagaaatctgaagcttcggggttctgttatgtcaatgatattgtacttggcattttggaa
ctcctgaaatatcaccagcgcgtgttatatatcgatatagacgtgcatcacggtgacggt
gttgaggaggcgttttacactaccgatcgcgtcatgaccgtaagcttccataaatacggc
gagtatttccccggcacaggtgacttgcgtgatatcggcgctggcaaaggcaaatactat
gctgtgaatataccactacgtgatggcatggacgatgaagcatacgaatccatatttgta
ccaatcatttcaaaggtgatggagacgttccaacctgcagcggttgtgctccagtgtggt
gcagattcattgacaggtgatcgccttgggtgctttaatttgactgtcaagggtcatgga
aaatgtgtagaattcgtaaagaaatacagcttgcccttcttaatggttggaggtggtgga
tatacgattcgtaatgtgtctagatgttggacatatgaaacgtcagttgcgctcggcgta
gaaattgcaaacgaactgccgtacaatgattactttgaatatttcggtcctgattttaag
ttgcacatcagcccgagtaatatgactaatcaaaacacttcagagtatttggaaaagatc
aaaaatagacttttcgaaaacttgcgtatgctgccacatgctcccggtgtacaaattcaa
gccataccggaagatgctatcaatgatgaatccgaggatgaagataagctcaacaaagac
gaaagaataccacaaagcgataaagataaacgaattgatcctgataacgaattctcagat
tcagaggatgaaggcgatggtggccgccgcgacaatcgatcttacaaaggtcaacgcaag
cgaccacgtttggaaaaagagagcaaaacagttacagaaaatgccgataataaggacgac
aaagagaagatggatacaaatgaaagtgaggaaactggtaaaagcgaagacgcaaaaaaa
gagaacaacatatga
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