Rhagoletis zephyria (snowberry fruit fly): 108363039
Help
Entry
108363039 CDS
T08513
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108363039
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108363039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3730
Focadhesin
PET122
Motif
Other DBs
NCBI-GeneID:
108363039
NCBI-ProteinID:
XP_017471743
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MYVVGFMLQPGRILLKAMDEFKNITPASSVVKISACLEKIFKKIAESREKKIAEHNIREI
EFLKTQCKSDIVQLSLLSSQTFVRLVEDGVLETTNVLTMLISMLPNSSPMQYTTITEGIV
SILLLGLKRKVALLKGSEVFQSQFGLKTQQHPIITLLQNPSVNINDVANKIVGICNHHDQ
QIKEHSVEYLRPVFFYILCNPQTLPDSKTIWTGLLSLSKTNLVAKQLVQEIFLWSKFNSS
TTCLFTSILLIEAIEHCLNCNDFTTAIDLCIFQALIVNNLTKYGIDPRPSLHCLLRVLHS
TREHTVNHYNVLLILFAESLHLLSPNYLHDLLRLIAFIVVQESCGNQYILNMCLDGIIQW
MSQTAFIPAEGLALAHQIVRKILAQGKETKNFTVHTNDLQAGQVRYMHPDIAIAFDLAKL
VESFDDSEFKDVFAFVDVLNVKANSMFCQRLHLFLRALFLSREPSVDCWFKIYEVILEII
KVNSGIAYDFLMTYIFKLAAEQQPEIQMELLRGLPSFSVSKDNIPMILNTIRNLTSENAT
FCMDLYLRLWRVESRTYPFLIKLLSTPQKDGSKRWEFEIAKTHTIREICYDKPTHHGSDL
VSHLSDTLNSCTDDSGDLATSLALDAIVALCDSHTVNIVSTWRVLSNKFRHERRPRALKS
LYRFFSHIPLLHTPTLEYEQLVDEALEQLWLTISRTDSEAEIVREALSALKSFEIGTLLA
MRHIPIQYRQDIPGVREFIGGREVVDLQQEMVPGEIWVRLLQNIRPECGSAVADLIAHHI
YAEINSYRSGVYRLPEGKPEPRKLQGLFPQSPLRAVVSYLVGQSRFGDHVTEPHVVTNAL
RAISKKFPKPIPPLDWCFLHSFFHLSFEARKYCILIAKNQLLHSGTAKRLLENFLADFEP
NCFEEDLLLLFSLLPEIANGISLQILKNFAEKIAIYSFKESQLSGFTEGCLFEKFIDSVK
YIFLGKCDIPEVLDIFTLIVERYMDSMDLDSRLFERYTEVVSVLHPNSIDGLTSPVNWWE
TPIGKLKKATIIRCYLVLYNTQLPNPLKWLTPIIDAYANRREEQPFFFRHLVATLYAFNN
DEQSCNWIMEMFLQIQALLAESSNKEKLDKVLYLLDIFILAVVVLSGCAVLLCNLDAVAT
QRKDRFALFPESMQFLCDHVFWKDQEAKIYEFLFNLYKNNAIPETYATTFKDAIICSRNK
SYFDNKGIWTKYVGLRK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtagtaggtttcatgttgcaaccaggaaggatattattaaaagcaatggatgaa
ttcaaaaacataacgcccgcatcgtcggttgtgaaaatatcggcgtgccttgaaaaaatt
ttcaagaaaatcgccgaaagccgggagaagaaaatagctgaacataacatcagggaaatt
gagtttttaaaaacgcaatgcaaatcggatattgttcaactgagtttactgagctcccag
acgtttgtgcggctagtagaggatggtgtcttagaaactacgaatgtgctaacaatgttg
atttccatgctgcctaactccagtccgatgcagtacaccacgatcaccgaaggaattgtc
agcatactgctacttgggttgaaacggaaggttgcgcttttgaaaggcagcgaagtattt
caaagtcagtttggtctgaaaacgcaacaacatcccattataacattactacaaaatcca
tcggtgaacataaatgacgtggccaacaaaattgtcggtatttgcaatcatcatgatcag
caaataaaggagcacagcgttgaatatttaaggccggttttcttttatatactctgtaat
ccacagacattgcccgattcaaagactatttggactggcttactgtcattaagcaaaaca
aacctcgtcgctaaacagctggtgcaagaaatcttcttgtggagtaaatttaactcttca
acaacatgtctgttcacaagcatactactaattgaagctatagaacactgccttaactgt
aacgattttaccaccgccattgatttgtgcattttccaagcgttgatagtaaacaatctt
accaaatacggcatcgatccacgtcccagtcttcactgtttattacgtgtgttgcatagt
acacgcgagcatactgtgaatcactacaatgtgctgctcatactcttcgccgagtctctg
catcttctctccccaaattatttgcatgatttactgcgcttaattgccttcatagtggtg
caagaaagctgtgggaatcaatacattctgaacatgtgcctcgatggtatcatccagtgg
atgtctcagactgcattcatacccgcagaaggtctggcactcgctcaccaaattgtgcgg
aaaatacttgcccaaggcaaggaaacaaaaaactttacggtacacacgaatgatttacaa
gcaggacaagttcgctacatgcatccggatattgctattgccttcgatctagccaagttg
gtggaatcttttgacgattctgaatttaaagatgtattcgcatttgttgacgtactcaat
gttaaagcgaattccatgttttgtcagcgattacatttgtttttgcgtgcgctgttctta
tcgcgagaaccatccgtagattgttggtttaaaatttatgaagttattttagaaataatc
aaagttaacagcggtattgcttacgattttctaatgacatatattttcaaattggcggca
gagcaacaacctgagattcaaatggagttactacggggtttgcccagtttttctgtatca
aaggataacataccaatgattttgaatacaatacgtaatctaacttccgaaaatgctaca
ttttgtatggatctgtatctgcgtttatggcgtgtcgagtcgcgcacatatcctttcttg
ataaaactactatccacaccacagaaagatggcagcaagcgttgggagttcgagatagcc
aaaactcataccattcgcgaaatctgttatgacaaaccgacacatcatggttccgatttg
gtttcgcatctatctgatacacttaactcctgcaccgacgattctggcgacttagctact
tcacttgctctagacgctattgttgccctttgtgatagccatactgtaaatattgtttct
acatggcgtgtgctaagcaacaaatttcgccacgaacgacgtccgcgtgccttaaagtca
ctttatcgattcttttcacatataccgttgctgcacacgcccacactagaatatgagcaa
ctcgtagatgaagctctagagcaactctggcttacaattagccgtaccgattccgaggct
gaaattgtgcgagaagcgctgtcagctttgaaaagttttgaaataggaacgctgctggca
atgcgtcacataccaattcaatatcgccaggatataccaggagttcgcgagtttattggt
ggtcgtgaggtggttgatttgcaacaggaaatggtgcctggcgagatttgggtacgtctt
ctacaaaatatacgtccagaatgcggatccgctgtggcagatttaatcgcacatcatata
tatgctgaaattaatagctaccgcagtggcgtctaccggttgcccgaaggcaagccggaa
ccacgaaagttgcaaggactctttccacagagtccgttgcgtgcagttgtaagctacttg
gtaggccagtcacgattcggtgaccacgtaacagaacctcatgtagtgacaaatgcactt
agagcaatatcaaaaaaatttccgaagcccataccaccgctggattggtgtttcctgcat
agttttttccatctctcatttgaggcaagaaaatattgcatattgatcgctaagaaccaa
ttgctacattcgggtactgcaaagcgcttgttggaaaattttctggctgatttcgaaccg
aattgttttgaagaggatctactgcttctgttctctttactaccggaaattgcaaacggc
attagcttgcaaattttaaagaatttcgccgaaaaaatagcgatttacagcttcaaagaa
tcacagttgagtggctttacggaaggatgcctctttgaaaagttcatagacagtgtgaag
tacatatttctaggaaaatgtgacattccagaagttcttgatattttcacgttgattgtt
gagcgttatatggattccatggatttggattcgagactcttcgagcgttacacagaggtt
gtctccgttctgcatcccaattccattgatggtctcacatcgcccgtcaattggtgggaa
acccccataggtaaactgaaaaaggccaccatcatacgctgctacctggtgctgtataac
acgcagctgcctaacccactaaaatggcttacaccaattatcgatgcgtatgccaaccgg
cgtgaggagcagccattcttcttccgccaccttgttgccactttatatgcctttaataac
gatgaacagtcgtgcaactggatcatggaaatgtttcttcaaatacaggcgctcttagcg
gagtcgtccaacaaagaaaaattagataaagttttatatcttttagatattttcatttta
gctgtggttgtgctttccggctgtgcagtgctgttgtgcaatttggatgctgtggcaaca
caacgtaaagatcgctttgcgcttttcccggagagtatgcagtttctgtgtgatcacgta
ttttggaaggatcaggaggcgaagatatacgagttcttgtttaacttgtataagaacaac
gccattccggaaacatatgccaccaccttcaaggatgctattatatgttctcgcaataaa
tcttactttgacaacaaaggcatctggacgaaatatgttggcttgagaaaatga
DBGET
integrated database retrieval system
