Rhagoletis zephyria (snowberry fruit fly): 108363158
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Entry
108363158 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108363158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108363158
03036 Chromosome and associated proteins [BR:
rze03036
]
108363158
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108363158
Coactivators
SAGA/TFTC/STAGA complex
108363158
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108363158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108363158
NCBI-ProteinID:
XP_017471927
LinkDB
All DBs
Position
Unknown
AA seq
1308 aa
AA seq
DB search
MAASSAKFFVHQNQNKANSSSPQTIIASQYKEINEDDGTQYPEFETRDFGGDFTYTDGGD
IVNEEYDDKIGYKSVSDRRSATTVAAFGGGEGNEAFVDIEEVISTKTVIVSSNSGNGSCS
DNKRDPLQRHLSSANFTAVPEEINNNWSDIKNSSEQTLNIPKKSESDDNWGEGIGTKFAY
QLQTQNLDQHTSWTPNEEASGLQPVAKTSDQHKNLCTDKSANKLPTKILNIRAPSSSLAL
TSLSSPASSFANFAMNSSQPTQAPGNRITFTSQTLPNGTINIGGAAGHPAGSTIISTSQL
PNTTTIKTITSSGAGGGQQHHSLPQQVQVQHHQVLQTGGQPGVAGQPSQQQHNAASQSVG
ATQTQTLVIKSNNAVSLPAGLVSSAPGIVTMTKTINQGNQQPLLNSMIPASVVVGMRPPN
AQQQQKNVQGNTLGRVVIGGPHMVGARPQNPAITLSTLAPGQTPALILKTENGYQLLRVG
TATSGPVTPTIGGSGGTNSTNPAQIRLQTVPAASMAVSSSTSNNIVVNSVASNTAGPHHS
YTSQANITLQQPQHHQTTLQHQQQQSHLQSQHHQQIHQQTQHLLPQPQITQIQTIPAQHS
AGATASTGTSNTTTMSNNHSAVVSTASAGTTTGTPTMATTQSAAQGNTKEKCRKFLANLI
DLATREPKPVEKNVRNLIQELVNANVEPEEFCDRLERLLNASPQPCLIGFLKKSLPLLRQ
ALFTRELVIEGIKPPPQHVAGLTTLQQFPKIQAQIRPISQNQTTTIGQTQVRMISPGGPG
GPRPIGHTTITKQQGGIRIQGPTSXPRLVNAQIRGPIPASIHQSNAQLPTAPNQANIVHI
RAPTVTQISRPATVQIRTAKGKNAPPGITHVKVGQTQIKAISSPVPSLVTSSQPPSLAAI
SNSLPPSSTPSLSAVSTILSTINSVATYSHAGSGTSLPTPSLPTVQLPPALMNSSSSHLH
NNAALAGIGESLRIIDHKVDLNIVKQEKIAPATPSACHSKQATTKSGASSASKASSKKKK
EQLDKEKEDKANASGAAATARLXFYQQPSISMSSSLYGDDDINDVAAMGGVNLAEESQRI
LGCTENIGTQIRSCKDEVFLHLPALQARIRAMVMERGLEEPSQDVAVLISHACXERLKNI
VEKLAVIAEHRIDVIKLDPRYEVTKDVRGQIKFLEELDKAEQKRHEEMEREMLLRAAKSR
SKIEDPEQAKMKARAKEMQRAEMEELRQRDANMTALQAIGPRKKIKLDGDAIGTGANSSA
GGALGASSVPXVPLRPRIKRVNLRDMLFFMEQERDTCRSQMLYKAYLK
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcttctgccaaattttttgtacaccaaaatcaaaataaagcaaattcttct
agtccccaaactattatcgctagccaatacaaggaaattaatgaggacgacggaactcaa
taccccgaattcgaaactagggattttggaggggattttacgtatacagatggcggagat
atagtgaatgaagaatatgatgataaaattggttataaaagcgtcagtgacagaaggtca
gcaacaactgtggccgcatttggtggtggagaaggcaatgaagcctttgttgacattgag
gaggtgatttccacaaagactgtaatcgtgagcagcaattctggtaacggcagttgtagt
gacaacaaacgtgatcctctgcagcgccatttatcaagtgcgaacttcacagctgtacct
gaagaaatcaacaacaattggagtgatataaaaaattcatctgagcaaacactaaatata
ccaaagaagtctgaaagcgacgacaattggggtgaggggatcggtacgaagttcgcatat
caattacaaacacaaaacttagatcaacatacttcgtggacccccaacgaagaagcgtct
gggctgcagcctgttgcgaaaacgtcggatcagcataaaaatctgtgtaccgataaatca
gcgaataaactaccaacaaaaatactcaacatacgagcgccgtcatcgtcattggcgtta
acgtcgttgtcgtcaccggcatcgtcgtttgcaaacttcgccatgaattccagccaacca
acgcaagcgccgggcaatcgcataacctttacaagtcaaactcttcctaacggcactata
aatattggaggagccgctggtcatcccgcaggctcaacaattatatcgacctcccaattg
cccaatacgaccacaattaagacaataacgtcaagtggagcaggaggcggtcaacagcac
cattctctgccgcagcaagtacaggtacaacatcatcaagtgcttcaaactggcggacaa
ccaggtgtggcgggtcaaccgtcgcagcaacagcacaatgcagctagccagtcagtaggt
gcaacacagacgcaaaccttagtaataaaatcaaacaatgcggtatcattgccagcgggt
ctggtttcaagtgcaccaggaatagttacaatgaccaaaacaatcaatcagggaaaccag
caaccattgctgaattccatgattcccgcgagtgtagtggtgggcatgcgtccacccaat
gcacaacaacaacagaagaatgtccagggcaacacattgggacgtgtagtaattggcggt
ccacacatggttggggcaaggccccaaaatccggcgataacactcagcacactagcacct
ggacaaacgcctgcactcattttgaaaaccgaaaatggatatcaattgctgcgcgttggc
acggccacctcgggcccggtgacaccaaccattggcggcagtggcggcactaactccacc
aacccggcacaaattcgtttacaaactgtaccagctgcttcgatggcagtgtcctcgtcc
acatccaataatattgttgtgaactccgttgcatcgaatactgccggcccacatcattca
tacacgtcccaagcgaatataacattgcagcagcctcagcatcatcagaccacactgcaa
catcaacaacagcaatcgcatctgcaatcgcaacaccaccaacaaatccaccagcagacg
caacatttgctccctcagccccagataacccaaatacaaacaattccagcacaacattca
gccggtgcgaccgcctctacgggcacttcgaacacaacgacaatgagtaacaaccacagc
gcggtggtgtccacggcaagtgccggcacaacgacggggacaccaactatggcgacaacg
caaagcgctgcgcaaggaaataccaaagagaaatgtcgaaagttcttggctaacttaatt
gatttggcaacgcgcgaacccaagccggtggaaaagaatgtgcgtaaccttatccaagag
ttggtaaatgcgaacgttgagccagaggagttttgcgatcggctggaacgactgttaaat
gccagtccacaaccttgtctaattggatttttgaagaaaagtttaccgctgctgcgtcag
gcgctttttactagggaacttgtaattgaaggcattaagcccccaccgcaacatgtagcc
ggtttgactaccttacaacagtttccgaaaattcaggcgcaaatacgccccattagtcaa
aatcaaacgactaccatcggacagacgcaagtgagaatgatttcgcctggtggcccaggt
ggtccccgacctattggacatacgacgatcacaaagcagcagggtggaattcgtatacaa
ggtcccaccagcnggcctcgacttgtcaatgcccaaatccgaggacccattccagcgtcc
atacatcagtcaaatgcgcaactccctactgcgccgaaccaagcgaatattgtacatata
agagctccaacagtaacacaaattagccgacccgcaacggttcaaatacgtactgcaaag
ggcaaaaatgcaccaccaggcattacgcacgtcaaagttggacagacccaaatcaaggcg
atctcctcgcctgtaccatcgcttgtcacgtcaagtcagccgccctcactcgcagctatt
tccaacagcttaccaccctcgtcaacaccatcgctatctgcggtatccacaattctatcc
accatcaattctgtggcgacatattcgcacgcaggcagtgggacatcgttgccaactcca
tcattgcccaccgtacaactgccccccgccttaatgaatagcagtagcagccatctgcac
aataacgcagcgttagcaggcataggagagagcctaagaatcattgaccacaaagtggac
ttgaacatcgtgaaacaagagaaaattgcacctgccacaccatcagcgtgccacagcaaa
caagcaacgacaaaatctggtgcttcatcggccagcaaagcatcaagcaaaaagaaaaaa
gaacaactggataaagaaaaagaagacaaagcgaatgcttcgggcgctgccgcaacagcg
cgtcttnncttctaccaacagccctctatatctatgtcttcttcattatacggggacgac
gatataaacgatgtcgctgccatgggtggtgtcaatttggccgaggaatcacagcgcatt
ctgggctgcactgaaaatatcggcacccagatccgttcgtgcaaggacgaagtatttctg
catctgcctgcgctgcaggcgcgtatacgcgcgatggtaatggagcgaggtctggaagaa
ccatcacaagatgtggcagtgttgatatcacatgcgtgcncagaacgtctgaaaaatatc
gtggaaaaattggctgtgatagcagagcatcgaattgacgttattaagctggacccacga
tacgaagtcacaaaagatgtacgtggtcaaataaaatttttagaggaattggataaagcg
gaacaaaaacgtcatgaggaaatggaaagagaaatgctattgcgcgctgccaagtctcga
tcgaaaattgaggatcccgagcaggcgaaaatgaaagcgagggcgaaagaaatgcagcgt
gccgaaatggaagaactgcggcagcgagacgccaatatgactgcgttgcaagctattgga
ccacggaaaaaaatcaagctagatggcgacgcaataggtacaggggcgaattctagcgcc
ggcggtgcattaggcgcatcgagtgtaccangcgtgccgctaagaccacggattaaacgc
gttaatctccgggacatgctcttcttcatggaacaggagcgcgacacatgcagaagccaa
atgttatataaggcatatcttaagtga
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