Rhagoletis zephyria (snowberry fruit fly): 108363527
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Entry
108363527 CDS
T08513
Name
(RefSeq) probable histone-binding protein Caf1
KO
K10752
histone-binding protein RBBP4
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03082
ATP-dependent chromatin remodeling
rze03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108363527
03083 Polycomb repressive complex
108363527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rze03036
]
108363527
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108363527
Histone modification proteins
HAT complexes
HATB complex
108363527
HDAC complexes
Sin3A-HDAC complex
108363527
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108363527
PRC2.2
108363527
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108363527
Heterochromatin formation proteins
Other heterochromatin formation proteins
108363527
Chromatin remodeling factors
NuRD complex
108363527
NuRF complex
108363527
NuRF complex (fruit fly)
108363527
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD_LRWD1
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_SPT8
NBCH_WD40
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
108363527
NCBI-ProteinID:
XP_017472399
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MVDRSDNAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQE
GKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEI
EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQ
KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL
LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT
VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSAE
DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIP
ASELESANA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggttgatagaagtgacaatgctgagtcttttgatgatgctgtcgaggagcgtgtcatt
aatgaggagtataaaatttggaagaaaaatacgccctttttgtatgacctggtaatgaca
cacgccttggaatggccgtcgctaaccgcacagtggctaccggacgttactaagcaagag
ggtaaagactattcagtacatcgtctgatcttgggcactcatacttcggatgaacaaaat
catttgctaattgcgagcgttcagttacccagtgaggacgcacagtttgatggttcacac
tatgacaacgagaaaggcgagtttggaggatttggttcggtttgtgggaagattgaaatc
gaaattaagatcaatcacgaaggcgaagttaatcgggcacgttatatgccgcaaaacgca
tgcgtcattgcaactaaaacaccatcaagtgatgtacttgtgtttgattacacgaaacat
cctagtaagccagaaccatcgggagaatgtcatccggatttacgtttacgaggacatcag
aaagaaggttacggtctctcgtggaatccgaatctaaatggttatcttctatccgcatct
gatgaccatactatctgcctttgggatataaatgctactccaaaggagcacagagtaatt
gatgcaaaaaacatatttaccggtcacaccgctgtagtggaagatgttgcttggcatttg
ctgcatgaatccctttttggctctgtagccgatgatcaaaaactaatgatttgggacacg
cgtaataataatacgtcgaagccttcacatacggtggatgcgcacacagctgaagtaaat
tgtttaagttttaacccatactccgagttcattttggcaaccggttctgctgataagaca
gtagctttatgggatttacgtaatctgaaattaaagttgcattcctttgagtcgcataag
gatgaaatcttccaagtgcaatggtcacctcataatgaaacaattttggcatcgtctgga
acggatcgccgcctgcacgtatgggatttatcaaaaataggcgaagagcagagcgcagaa
gacgccgaagatggacccccagagctattatttatacatggtggacatacagcgaagatt
tcagatttttcctggaatcctaatgaaccttggataatttgttcagtatcagaggacaat
attatgcaagtctggcagatggccgaaaatgtttataatgacgaagagcctgaaatacca
gcatctgaactagaaagcgccaacgcctaa
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