Rhagoletis zephyria (snowberry fruit fly): 108363868
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Entry
108363868 CDS
T08513
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03022
Basal transcription factors
rze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108363868
09124 Replication and repair
03420 Nucleotide excision repair
108363868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108363868
03400 DNA repair and recombination proteins [BR:
rze03400
]
108363868
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108363868
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108363868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
108363868
NCBI-ProteinID:
XP_017472869
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERLAWMAENRDTVAVSHRFADIKMQKISPEGK
PKVQLQVVLHDGNSSTFHFVNRDGQQAMLADRDKVKELLQQLLPNFKRKVDKELEEKNRI
LSENPNLLQLYKDLVITQVLTSEEFWATHAKEHAMKNVNKKQDIGVSGAFLADIKPQTDG
CNGLKYNLTPDIILCIFKTYPAVKRKHQENVPAKLSEAEFWTKFFQSHYFHRDRITAGSK
DIFTECGKIDDQTLKAAVQQGAGDPLLDLKQFEDVPLEEGFGSVNGNRNIANSGNIVHQN
MIKRFNQHSIMVLKTCADVAGSSTSTANGPAKIKDARSTEHATANGGTEKSKHSKDGKGT
DADNHVAAHAAAGSPLRPTKRQRIMEKIHFEDLGDPLIESADANDANKKPKKSQQLSLAK
EERYLHGPVPITGYDMQEDPRRMEEVQYHLMRATETWTQRTPHKVLVSSTAAVNALGELS
PGGALMRGFHDQSAGQLVPPDFEKDLRNLYLSLSELLKHFWNSFPPTTAEAEEKAMRMHE
ALQRFKMAKLVPFESRALHELSPLGASLTQHLNRLLQAANAKFVTWQDRKMRQHR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacgactagcagtgaggacgtgctattgcaaatgggggaagtgcgttacaaaaagggc
gacggaacgctctatgtaatgaacgagcgtcttgcttggatggcagagaaccgcgatact
gtggcagtgtcgcatcgatttgccgatatcaaaatgcagaaaatatcacctgaaggcaag
cctaaggtgcaacttcaggtcgtattgcatgacggtaacagttccacattccatttcgtc
aaccgtgatggccagcaggcgatgctggctgaccgtgataaggtgaaagaactgctgcag
cagctgttgccaaactttaaaagaaaagtggataaggaattggaagagaaaaatcgtata
ctttcggaaaatccaaatcttttgcaactttataaggatttagtaataacacaagtactc
accagtgaagaattctgggccacacacgccaaggagcatgccatgaaaaatgttaacaaa
aagcaagatattggtgtatctggtgcctttcttgctgatatcaaaccacaaacggatggt
tgcaacggcctgaaatataatttaacacccgacataatcttatgcatttttaagacctat
cccgctgtaaagcgaaagcaccaagaaaatgtaccagccaaattgtcggaggcggaattt
tggacaaagtttttccagtcgcattattttcatcgtgatcgtattacagcgggctctaaa
gacatatttacggaatgcgggaaaattgatgatcaaacgttaaaagctgctgtacaacaa
ggtgccggagatccgctgctcgatcttaaacagtttgaagatgtgccgctagaagaaggt
ttcggcagtgttaatggaaatcgcaatatagctaatagtggcaacattgtgcaccagaat
atgataaagcgatttaatcagcactccataatggtgcttaaaacttgcgcagatgtagct
ggcagttctacttcaacggccaatggacctgctaaaattaaagatgcaagaagcacagag
catgctactgcaaatggtggtactgaaaaatcaaaacattcaaaggatggcaaagggact
gatgctgataatcatgtcgcagcccatgctgccgctggaagtccacttagaccaacaaaa
cgccaacgtattatggaaaaaatacactttgaagatcttggtgatccactaatagagtca
gctgatgctaatgatgccaataaaaaacctaagaaatcacaacagctgtcactagcaaaa
gaggaacgttatttacacggtccagtgccaattactggctatgatatgcaagaggatccg
cgacgcatggaagaagtgcagtatcatttaatgcgtgccacagaaacttggacacagcgt
acaccgcataaagttttggttagctcaacggcagcggtaaatgcgctcggcgagctgagt
ccgggtggtgcgcttatgcgtggcttccatgaccaatcagctggacagttagtgccacct
gacttcgaaaaggacttgcgtaatctatatttatcattgtcagaattgttgaaacatttc
tggaatagcttcccaccaacaaccgcagaagccgaggaaaaggctatgcgcatgcacgag
gctctccaacgtttcaaaatggccaaacttgtgccgttcgagagtcgcgcattgcatgaa
ttatcaccattgggtgcatcgttgacgcagcatttgaatcgtttattgcaggcggcaaat
gcaaaatttgttacatggcaggaccgcaaaatgcgccagcataggtag
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