Rhagoletis zephyria (snowberry fruit fly): 108364273
Help
Entry
108364273 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03008
Ribosome biogenesis in eukaryotes
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108364273
09123 Folding, sorting and degradation
03018 RNA degradation
108364273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108364273
03019 Messenger RNA biogenesis [BR:
rze03019
]
108364273
03009 Ribosome biogenesis [BR:
rze03009
]
108364273
03016 Transfer RNA biogenesis [BR:
rze03016
]
108364273
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108364273
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108364273
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
RNases
108364273
Transfer RNA biogenesis [BR:
rze03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108364273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-FCS
Motif
Other DBs
NCBI-GeneID:
108364273
NCBI-ProteinID:
XP_017473368
LinkDB
All DBs
Position
Unknown
AA seq
882 aa
AA seq
DB search
MGVPAFFRWLSKKYACVIVDCNENKTTDPDTGKAIYEDATLPNPNGIEFDNLYLDMNGII
HPXTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKEANEKRVEIQKIRDELLVKGCILPPEKTDEEHFDXNCITPGTPFMDRLSKCLHYYI
HDRMNTNPAWKGIKVVLSDANAPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM
LGLATHEPNFTIIREEFLPNKPRPCDICKQYGHEMQKCVGLGNAGSSNDESFKPDVPINA
EVRFIFVRLSVLREYLKKTLEMPNLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIRE
GAVDRLVELYKKCVYKTGGYLTNSGDVNLQRVQMILTDLGNVEDNIFKERQRREQQFKAR
QKRQRENEYRAESLGASTFFQPSAVNRGASGSQRGAFNYKEEAMKLRMQNNKGVKRTAAE
AGLDNDSEEDDNDEVRLYEAGFKNRYYESKFDVGTNNPGFRYSVALQYVRGLCWVLKYYY
QGCASWDWYFPYHYAPFASDFVNITGLSTSFDRGTKPFNPLEQLMGVFPAASSSHVPKPW
ATLMSDPDSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDERRLFKALKPYYSKLTEEEI
RRNKRGDNRLYIGKLHPKFEWFKHQLKSLSSMEQKISVVLEGMGGSILKAEDNVKIQGSL
KSPIYGLPNITSNELITVRFRDPEYDIEFIFPAKRLPNAIDPPNVLNSNSEGGQSGHNRP
IIGFNRNLPTGHLSAGGHRMLQANLGRPNYNTGGNNRGQYPRGPNPQQNFQSRSGYNNYQ
NNFGNNSGGNNYRNNQQHQQRGGQHNNRFQRYNPYGQHNNRY
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggctttttttaggtggttaagtaagaagtatgcgtgtgttatagttgat
tgcaacgaaaataagactacggatccagacactggaaaagctatatacgaagacgccact
ctccccaaccctaatgggattgagtttgataatttatatttagatatgaatggtataata
catccantgactcatcccgaagataagcccgctccgaagaatgaagacgaaatgatggta
gcgatatttgaatgtattgatcgcttatttggcattgttcgtcctcgcaaattgttatat
atggccattgacggagtggcgcccagagccaaaatgaatcagcaaagatcgcgccgtttc
agggctgccaaggaagcaaatgaaaaacgcgtcgaaatacaaaagatacgagatgagctt
ctagtcaaaggttgtatactaccgcctgaaaagactgatgaggagcacttcgatntcaat
tgtataacaccaggtacgccgtttatggatagattaagtaaatgtttacattattacatc
cacgaccgaatgaatacaaaccctgcctggaaaggcataaaagttgtattgtcagatgcc
aatgcacccggagaaggtgaacacaaaataatggactacattcggaaacaaagggctcaa
ccagatcacgatccaaatacacaacatgttttgtgtggtgcagatgccgatttgattatg
ttgggcctggccacacatgaacctaattttaccattataagagaagaatttttacccaac
aaacctcgtccttgtgacatatgtaaacaatatggacatgagatgcaaaagtgtgtggga
ctaggcaatgcaggtagctcaaatgatgaaagctttaaacccgatgttccaataaatgct
gaagtgagattcatatttgtacgtttaagtgttcttcgggaatacctaaaaaaaactttg
gaaatgccgaatttgccattcaagtatgactttgagcgcgctttggatgactgggttttt
atgtgcttctttgttggcaatgattttttaccacatttaccgagtcttgaaattcgtgaa
ggcgcagtggatcgattagtagagctttataaaaaatgtgtctataaaactggtggatat
ctaacaaattcaggcgatgtgaatttgcagagggtacaaatgatactaactgatttgggc
aatgttgaagataacattttcaaggagagacagcgacgtgaacaacaatttaaagcacgt
caaaagcgtcagcgtgaaaacgaatatagagcagaaagtcttggcgcgtcaacgttcttt
caacctagcgctgtaaatcgaggagcttcaggctcacaacgcggtgcattcaattacaag
gaagaagctatgaaattaagaatgcaaaataataaaggagttaaaaggacagctgccgaa
gcagggcttgataacgattctgaagaagatgataacgacgaagtccgattatatgaagca
ggcttcaaaaatcgctattatgaatctaaattcgacgtgggtacaaataaccccggcttt
cgctactctgttgctttgcagtatgtacgtgggctatgctgggtactaaaatattactat
caaggttgtgcttcgtgggattggtattttccttaccattatgcaccctttgcttcagat
tttgtaaacataacgggtttgtcgacaagttttgacagaggtacaaaaccatttaatccg
cttgaacaattgatgggtgtctttcctgcagccagctcgtcacatgtaccaaagccatgg
gctactctaatgtccgatccggattcaccaattattgacttttatcctgaagattttaaa
attgatttaaatggcaaaaaatttgcttggcagggcgtggccttgcttccatttgtagac
gaacggaggctttttaaagctctaaaaccgtattatagtaaattaactgaagaagagatt
cgacgtaataaacgcggagataatcgcctttatattggaaaattgcaccctaagtttgaa
tggtttaagcatcagctgaaatcactttcatctatggagcaaaaaatttctgttgttttg
gaaggaatgggtggtagcattttaaaagctgaagataatgtaaaaattcaaggttcactt
aaatcgccaatatatggactgccgaatataacatccaacgagcttattacagtacgcttc
cgggatcctgaatatgacattgaattcatatttcctgccaaacggttgcctaacgcaata
gatcctccaaacgtacttaactcaaattcagaaggaggacagtctggacacaatcgacca
attataggattcaacagaaacctcccaactggacatttgagtgcagggggtcatagaatg
ttacaagccaacttgggcagacccaattataacacgggtggaaataacagggggcaatat
cctcgaggaccgaatccccaacaaaatttccaatctcgatctggttataataattaccaa
aacaattttggcaacaattctggcggaaataattaccggaataatcaacaacaccagcag
agaggtggacaacataacaacagattccaaaggtataatccttatgggcaacataacaat
agatattaa
DBGET
integrated database retrieval system
