Rhagoletis zephyria (snowberry fruit fly): 108365033
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Entry
108365033 CDS
T08513
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108365033
Spliceosome [BR:
rze03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108365033
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
108365033
NCBI-ProteinID:
XP_017474431
LinkDB
All DBs
Position
Unknown
AA seq
1151 aa
AA seq
DB search
MASKEDNVSGENPVRRTRSGRKVVAPPAVPTPVRSTRRTKRGAPEQVTETDEDEVQLIPT
EKETINTLENQSDVIKEMLEEAAQGVIIDIPDGDDDVIIYEEEIIESEQIVDDDCIVYEE
QLGEEEQLPEEEQLPEEEQLAEEEQQPIEEDVEMFTVPEEEQVNTEVPVISETGLDEKSS
SFPFGPTGGQSETSEDVHNEEGTAETGVVESSLLASLAGDNANSLPSVGGGEENDGKKDD
FETKVTPELPNCEKMESDDSLSEPAIAEELGTGADASNATIVNTELVSEDELPLPTKPEI
NDAEEVSDDELPAPQRAELPADAEVISEDELPTATGQAEKKSPPSSPKTPIKSNSSQSVS
SKEPVGQKRKADDADKIDSNHEKQRKVEDSKKKSDEQYNPMSPTSESNDGSPTITVEKKT
KVDSSGESEHKERKREKEKEREREKEKEREKEKEKDKEKEKEKERKRLPDLDKYWRAVKE
DPADFTGWTYLLQYVDNESDPEAAREAYDAFLSHYPYCYGYWRKYADYEKRKGIKANCNA
VFERGLEAIPLSVDLWIHYLAHVKGNHAEDESYIRSQFERAVDACGLEFRSDKLWDAYIK
WESESKNYQNVVKIYDRLLAIPTQGYSGHFDNFQDLINQHSIVSTITAEELRKVRTELRE
SNASRSSSSRSKSRRSGSRDKEKEKERENRDVKKDDEPGSKSPNAKDAETNQEETPVPFN
IEAIEVDHETDDAANSAEKVSQEEDLADVSSLTEEEETAIKDKIISIRRKLHKSTVAAVT
ARWTFEEGIKRPYFHVKPLERCQLKNWKDYLDFEIEKGDRTRILVLFERCLIACALYDEF
WLKMIRYLETQLDQPGIAAITSDVYRRACEIHHPDKPSLHLMWAAFEECQNDFDRAAAVL
ENLEKKCPNLLQVAYRRINVERRRGDMNKCRELYEHYINTAKNKTIAGSLAIKYARFLNK
ICDDLEGGLRVLRQALDKDAANTRVALQMIDLVLQRPKVDEDEVVLIMDKFMARENMDPE
QKVLFAQRKVEFLEDFGSTAKGLQDAQRALQVALSKATEAKKKRESSPSRKSSSSSKELS
MSNSAASSAYNNGVTATASGYNYNSANSAYYGQQNSGAYTAQQSYDGYYNHWQYGSSYGN
YGQWSGYGNYY
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaagaagataacgtttctggcgaaaatccagttcggcgaacgagatcaggc
agaaaagttgtagctcctccagcagttccaactccagtacgctccactagaaggacaaaa
cgaggtgcgccagaacaggttacagaaacagacgaggacgaagtccagcttatacctaca
gaaaaggagacgataaacacactcgaaaatcaatcagacgttattaaagaaatgttagaa
gaggcagcgcaaggtgttattattgacatcccagacggagatgacgatgttataatttat
gaagaggaaattatagaatcggaacaaatagtcgacgatgattgcattgtgtatgaagaa
caattgggtgaagaagaacaattgccggaagaagaacaattgccggaagaagaacaattg
gcggaggaagaacaacaaccgatcgaagaagatgttgaaatgttcactgtgccagaagaa
gagcaagtgaacacagaagtgcccgttatatcagaaacaggactcgacgagaaaagttcc
tcgtttccatttgggccgacaggaggccagtccgaaacatcagaagatgtacacaacgaa
gaaggtacggctgagactggagtggtagaaagttctttattagcttctctggcaggagac
aatgccaatagtttaccctcggtaggaggtggtgaagaaaatgatggtaagaaggatgac
tttgaaacaaaagtaacgccagaattgccaaattgcgaaaaaatggaatcggacgattca
ctatccgaaccagccattgcagaagagcttggcactggggccgatgcaagcaatgctact
attgtaaacacggaattagtttcagaagacgaactccctttaccaacaaagcccgaaata
aatgatgcagaagaggtctcagatgatgagctcccagcaccacaacgtgctgaattgcct
gcagatgctgaagttatatctgaggatgaactgcctactgcaacaggtcaagcagagaag
aaatcaccaccttcatccccgaaaactcccatcaaaagtaattcttcacaatcggtttct
tctaaggaacctgttggtcaaaaacgcaaagctgatgatgccgacaagatcgattcgaat
catgaaaaacaacgtaaggtggaggactcgaagaaaaaaagcgatgaacaatacaatcca
atgagtcctacatcagagagtaatgatggatcgcccactataacagtagaaaagaaaact
aaagtggatagctccggggagagtgaacacaaagagagaaaaagggagaaagaaaaggag
cgtgaacgcgaaaaagagaaggaaagagaaaaggagaaagaaaaggataaggaaaaagaa
aaagaaaaggaacgcaaacgattgcctgacttggataaatactggcgtgcagtgaaagaa
gatcccgcagatttcactggttggacatatttgctgcaatatgttgacaacgagtctgat
cccgaggccgcacgtgaggcttatgatgcattcctatcgcactatccatattgctatggc
tattggcgcaagtatgctgactatgaaaagcgcaagggtattaaggccaattgcaacgcg
gtatttgaacgtggacttgaagcgatccccttgtctgtggatctgtggatccattatcta
gcacatgtaaagggaaaccatgcagaggatgaatcatatattcgttcacagtttgaacgt
gctgtagacgcctgcggtctggagttccgctccgataagctctgggatgcctacattaaa
tgggaaagtgaatcgaagaattaccaaaatgttgtaaagatctacgatcgtttattagcc
attccgactcaaggctacagtggacattttgataatttccaagacttgataaatcaacac
tccattgtgagcactataaccgctgaagaactgcgcaaagttcgcactgaacttcgtgaa
agcaatgcatcccgttcttcatcgtctcgttctaagagtcgacgaagcggttccagagac
aaggaaaaagaaaaggaacgtgaaaaccgtgacgtgaagaaagacgatgaaccgggcagc
aaatcgccaaatgccaaagatgctgaaactaatcaggaggaaacaccggtcccatttaat
atcgaagcaatcgaagttgaccatgagacagacgacgctgcaaactccgccgaaaaagtc
agccaggaggaggatctcgctgatgtaagcagtcttactgaagaggaggaaacagccatt
aaagacaaaattatttcgattcgtcgaaaattacataaatcaaccgttgctgcagtaact
gctcggtggacttttgaagaaggcataaaacgcccctatttccatgtgaagccactcgaa
cgctgccagctgaagaattggaaagactatctcgattttgaaatcgaaaaaggcgatcgc
acccgcatcttggtgctcttcgaacgttgtctaatcgcgtgtgctttgtatgacgaattc
tggctaaaaatgatacgttatcttgagacccagttagaccagcctggtatcgcagctatt
accagtgatgtttaccgccgcgcctgcgaaatccatcaccccgacaaacctagtcttcat
ctaatgtgggcggcatttgaagagtgtcaaaacgattttgatcgcgccgccgcagttttg
gaaaatcttgaaaagaaatgtccaaatctactgcaggtcgcatacagacgcattaacgtg
gaacgtcgtcgtggcgacatgaataaatgtcgtgaactgtatgaacactatataaatact
gcaaagaataaaacaatcgctggcagtttagcgatcaagtatgcccgatttttgaataag
atctgcgatgatctggagggtggactgcgtgtgctgcgacaggcactagacaaagatgct
gcgaatacacgcgtggcattgcaaatgatagatctggttttgcagcgcccaaaggtggat
gaggatgaggttgtgctaattatggataaatttatggcacgtgaaaatatggatcccgaa
cagaaagtactatttgcacagcgcaaagttgagtttttggaagattttggtagcacagcg
aagggcttgcaagacgcgcagagggcactacaagtagcactaagtaaagcaactgaagct
aagaagaagcgcgaatcgagtccttcgcggaaatcctcttcgagcagcaaagaattgtca
atgtcgaattctgctgcttcatcagcatacaataatggcgtcaccgctaccgcttcgggt
tataattataattcggcaaattcagcttattatggtcaacaaaacagtggcgcctacaca
gcacagcaatcatatgatggctactataaccattggcagtatggttctagttatggcaat
tacggacaatggagcggatatggaaactactattaa
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