Rhagoletis zephyria (snowberry fruit fly): 108365177
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Entry
108365177 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108365177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108365177
03009 Ribosome biogenesis [BR:
rze03009
]
108365177
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108365177
Spliceosome [BR:
rze03041
]
Complex A
U2 snRNP components
U2 related factors
108365177
Complex B
108365177
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108365177
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
90S particles
Helicases
108365177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
nSTAND3
Flavi_DEAD
PhoH
AAA_29
AAA_30
AAA_25
Cellulase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108365177
NCBI-ProteinID:
XP_017474630
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MKKHRINLDSDFKPKKQCTEESKISGGDGTASAAAGSSKTVTGLNPNTGLAYTQHYYELF
RKRIQLPVWEYQDKFLTLLGQENIMVLVGETGSGKTTQIPQWCVDYCRKNSIKIGVACTQ
PRRVAAMSVATRVAEEMDVELGQEVGYSIRFEDCCSSRTVLKYCTDGMLLREAMSDPLLE
AYSIIILDEAHERTLSTDLLMGVLKQVVAKRNDLKIIVMSATLDAGKFQNYFDSCPLLSV
PGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEDEGDVLLFLTGQEEIEEACKRIKREV
DSHGNDVGELKCIPLYSTLPPNMQQKIFDPAPASKNGLVGRKVVVSTNIAETSLTIDGVV
YVIDPGFSKQKVYNPRIRVESLLVSPISRASAQQRAGRAGRTKPGKCFRLYTEKAFKNDM
QEQTYPEILRSNLGMIVLQLKKLGIHDLVHFDFMDPPAPETLMRALELLNYLGALDDEGE
MTDTGAIMAEFPLDPQLARMLISSCDYNCSNEILSIVAMLSVPQCFVRPNEQKKAADDAK
LRFAHVDGDHLTLLNVYHAFKANKDDPSWCYDNFINYRSLKTADNVRQQLSRIMDRFNLK
RTSTEFTSRDYYLNIRKALVCGYFMQVAHLERNGVYLTIKDNQVVYLHPSSVLEHKPEWA
LYNEFVLTTKNYIRTVTEIKPDWLLRIAPAYYNLEYFPQCEAKRQLEFLSSRIQERQLRR
QMKXNESVRECSMCVLAVTAVLQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacaccgaatcaatttagattcggattttaagccgaaaaaacaatgcacagaa
gagtccaagatcagcggcggagacgggactgcgtctgctgcagcaggctccagcaaaact
gtgaccggcttgaatccaaacaccggactagcatacacccaacactactatgaactgttt
cgcaagcgcattcaactgcctgtatgggagtatcaagacaagtttctaactcttcttgga
caggaaaacatcatggttcttgttggtgaaactggcagtggaaagactactcaaattcca
caatggtgtgtagactactgcagaaagaatagcatcaaaattggagttgcttgcacacaa
cctcgtcgagtggccgccatgtcggttgcaactcgcgtggccgaagagatggacgttgaa
ctaggacaagaagtgggctactccattcgatttgaggactgctgcagctctcgcaccgtc
ctgaagtactgcaccgacggtatgctcttgcgtgaggccatgtccgatccactgcttgag
gcatacagcatcatcattctcgacgaggctcacgaaagaactctaagcactgatctacta
atgggcgtcctcaagcaggtagttgccaagcgtaatgatttgaaaatcatcgtcatgagt
gctacacttgatgctggaaaatttcaaaactactttgacagctgtcctcttttaagtgtt
cccggtagaactcatccagttgaaattttctacactcctgaacccgaacgggactacctt
gaagcggctattcgtactgtcgtccagattcacatgtgcgaggacgaaggggatgtatta
ctgtttctcactggtcaagaagaaattgaagaagcatgcaaaagaatcaagagagaagtc
gatagtcatggcaatgatgttggagaattaaagtgcattccactctactcaacactacct
ccaaacatgcagcagaaaatatttgatcctgcaccagctagcaagaatggtttggttgga
agaaaggtggtcgtgtcaactaacattgctgaaacatccctaaccatcgatggcgtagtc
tatgttattgatcccggattttcaaagcaaaaagtttacaatcctcgtattcgggtagag
tcgcttttggtttctcccatttcacgggcttctgcccaacagcgtgccggtcgtgctggt
cgtactaaaccaggaaagtgcttccggctctacacagagaaggcatttaaaaatgacatg
caagagcagacgtatccagagattcttcgctcaaacctgggcatgattgttttgcagttg
aagaaacttggaattcacgaccttgttcactttgactttatggaccctccagcacctgaa
acactgatgcgagcactggaattactcaactaccttggtgctttagatgacgaaggcgaa
atgactgatactggcgccatcatggccgaattcccacttgatcctcaactagcgagaatg
ctaatctcttcttgtgattacaattgctctaatgaaattctgtcaattgttgccatgctt
tctgttccgcagtgttttgtcagacccaacgagcagaaaaaggccgctgacgatgcaaag
cttcgattcgcccacgttgatggggaccacttgactctgctaaatgtttatcacgctttt
aaagcaaacaaagatgatccttcctggtgctatgacaactttatcaattaccgttcacta
aaaacggctgacaatgttcgccagcaactttctcgaattatggaccggtttaacttgaag
cgaacttcgacggaatttacctctagagattattacttgaatattcgcaaggcacttgtg
tgtggatatttcatgcaggttgcccaccttgagcgaaatggcgtctatttgacaatcaaa
gacaaccaagtggtttaccttcatccatcttctgttttggaacataaacctgagtgggcc
ttgtacaatgaatttgtgctaactactaaaaactatatccgaacagtgactgagataaag
cctgactggttgttacgtatcgcccctgcctactataatttggagtatttccctcagtgc
gaggctaagagacaactcgagtttttatccagccgaattcaagaaagacaactgaggcgg
caaatgaaatgaaatgaaagtgtgagggagtgttcgatgtgtgtgcttgcagtgactgca
gtgctgcaatga
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