Rhagoletis zephyria (snowberry fruit fly): 108365956
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Entry
108365956 CDS
T08513
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108365956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108365956
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108365956
Spliceosome [BR:
rze03041
]
Complex C
Other components
Step II factors
108365956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_7
AAA_16
ABC_tran
Sigma54_activat
Sigma54_activ_2
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
108365956
NCBI-ProteinID:
XP_017475681
LinkDB
All DBs
Position
Unknown
AA seq
1260 aa
AA seq
DB search
MEDDDAGVHRLEGSSGNVRGGLIIKKQKEEGSDSKFILPKPSILGLDRLAAQRRKEREEA
QRLISFKDNENDEDDERKGGVSATSIGDEFAFKKPDTSSVHKMNRQLREPKVETPSHTGG
VSEEARERLREHVKRDRERTTKGGMRYSTREYSKNDSRDRSSSSSSSRDRDRDRERRRDR
DRYAYIRDRERDKDRDRDRNRDRDRHDRSKNDSERTNRGDATSVRSGERTPRFKDEPQTP
MNISVSGSAWDDDDTDRPSQSKKSSWDFPTPKSYASSDRPDSSTRSSNTSGIGTSSSRSR
SRHEREDDTPRPTPAHNYNAWANDRKRSGATPATGRSNRQPWGESEEDRDLWEEEQRRLD
REWYNIDEGYDDENNPFTGANAEYFKKREEIIEQKRTKRISAQQRQINKDNELWERNRML
TSGVVMSINVNEDFDEEALERVHLLVHHIIPPFLDGRIVFTKQPEPVIPVKDPTSDMALI
ARKGSALVRVYREQKERRKAQKKHWELSGTKLGNIMGIEKKIDEEDAKFDKDTDTADYRK
DQKFAEHMRDQDSGGMSDFARKKTILEQRRFLPVFAVRQELLNVIRENSVVIIVGETGSG
KTTQLTQYLHEDGYSNFGMIGCTQPRRVAAMSVAKRVSDEMGTKLGDEVGYAIRFEDCTS
EKTVIKYMTDGILLRESLRDPDLDGYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKL
IVTSATMDSTKFATFFGNVPTFTIPGRTFPVDVMFSKNTCEDYVESAVKQTLQVHLTPNE
GDMLLFMPGQEDIEVTCEVLAERLAEIDNAPELSILPIYSQLPSDLQAKIFQKSPEGLRK
CVVATNIAETSLTVDGIIYVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRT
GPGQAFRLYTQRQYKEDLLALTVPEIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNI
LNSLYQLWILGALDHTGALTPLGRQMAEFPLDPPQCQMLIVSCQMECSAEVLIIVSMLSV
PSIFYRPKGREEEADGVREKFQVPESDHLTYLNVYLQWKQNNYNSSWCNEHFIHVKAMRK
VREVRQQLKDIMVQQKLNVKSCGTDWDIVRKCICSAYFYQAARLKGIGEYVNLRTGMPCH
LHPTSALYGLGTTPDYVVYHELVMTAKEYMQCATAVDGYWLAELGPMFFSVKETGRSGRE
KKKQAAEHLKEMETQMLLAQEQMEERKMQAAQREEQMTPKQEIITPGDATPRRTPARIGL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgatgctggtgttcaccgactggaaggttcctctggcaacgttcgtggc
ggattgattattaagaaacaaaaagaggaaggcagcgatagcaaattcatactaccaaag
ccgtctatactgggtttggatcgtttagctgctcagcgacgtaaagaacgagaggaggca
caacggttaatatccttcaaagataatgagaacgatgaagatgatgaacgtaagggtggt
gtttccgctacatctattggcgatgaatttgctttcaaaaagcccgataccagtagcgtt
cacaaaatgaataggcaactgcgggaacctaaagtagaaacaccatcacatacggggggt
gtgtcagaagaggctcgggagcgtttgcgtgagcatgttaagcgggatcgagagcgcact
actaaaggaggaatgcgctattccactcgtgagtacagtaaaaatgattctagagatcgt
tcatcttcaagctcatctagtcgtgatcgcgatcgagatcgagaacgccgacgcgataga
gaccggtatgcatacatacgtgatagggaaagagataaggatcgtgatagggacagaaat
agagacagagatcgccatgatcgcagtaaaaatgattctgaaagaactaatcgtggtgat
gcaacatccgttcgtagcggcgagcgcacaccaagatttaaggatgagcctcaaacaccg
atgaacatatctgtgagtggcagtgcatgggatgatgatgacaccgaccgaccttcacaa
tcaaagaaatcatcctgggactttcctacacccaaatcatatgctagttcagatcggccc
gattcgtcgacaagaagcagcaatactagcggtattggtacaagtagttcacgtagtcgt
tctcgtcacgaacgtgaagatgatacaccgagaccaacacctgcccataactataatgca
tgggccaacgaccgcaaacgatctggtgcgacacccgcaactggacgaagcaatcgccaa
ccgtggggtgaaagtgaagaggaccgtgatctatgggaagaagagcagcgccgactagat
cgtgaatggtataatattgatgaaggatatgatgacgaaaataatcctttcacaggggcc
aatgcggaatatttcaaaaaacgagaagaaataattgaacaaaagcggaccaaacgtatt
agtgcacaacaacggcaaattaacaaagataacgaattatgggagcgtaatcgtatgctt
acttccggcgttgttatgtccatcaacgtaaatgaagatttcgatgaggaagcattggag
cgcgttcatctgttggtgcaccacattataccaccattcctcgacgggcgaatcgtgttc
actaaacaacccgaaccggttatacccgttaaagatcccacctcagatatggcattgatt
gcgcgcaaaggcagcgctctggtacgtgtgtatcgcgagcaaaaagaacgtcgaaaagcg
caaaagaagcattgggaattgagtgggaccaaattgggtaatatcatgggtattgaaaag
aagattgacgaagaagatgccaaattcgacaaggataccgatacagcagattatcgaaaa
gaccagaaattcgctgaacatatgcgcgatcaagattctggtgggatgagtgattttgca
cgcaaaaagaccattttagagcagcgtagatttttgcctgtattcgctgtgcgccaagag
ctgttgaatgtaatcagagagaactctgtagtaattattgttggagaaacaggcagcggc
aaaacaacgcagttgactcaatatttacatgaagatggttacagcaattttggcatgata
ggttgtacacagcctcgtcgtgtcgcagccatgtctgtggcgaagcgtgtttccgatgaa
atgggtactaagttgggtgacgaagtcggttatgctatacgattcgaagattgcacttcc
gaaaagactgtaatcaaatacatgactgatggtattttattgcgtgaaagtctacgggat
cccgatttagatggctattcggccattataatggatgaagcgcatgaacgttcattatct
actgatgtgcttttcggattattacgtgagattgttgctagacgccatgatctcaagttg
atcgtcacttcggccacaatggattcgacaaagttcgccacattctttggtaatgtacca
acgtttacaattcctgggcgtacattccccgtcgatgtaatgttcagtaaaaatacctgt
gaggactatgttgaatcagcggttaagcagactctacaagtgcacctcacacccaacgaa
ggtgatatgttactatttatgccgggccaggaagatatcgaggtaacatgcgaagtgctt
gccgagcgcttagccgaaattgataatgcgcccgagctatctatactgccaatctattca
caattaccctccgatttgcaagcgaaaatattccaaaaatcaccggagggtttacgcaaa
tgtgttgtggctacaaatatcgccgaaacttcgctgaccgttgatggcatcatatatgtt
atcgattcgggttattgtaaactgaaagtctacaatccgcgtatcggtatggatgcattg
caaatttatcctatttcacaggcgaacgccaatcagcgttcgggtcgagcagggcgcaca
ggacccggacaggcttttcgtctgtacacacaacgtcaatacaaggaggatttactggcg
ttgacagtacctgagatacagcgtactaatctagcgaatacagtgttgttgctgaagtcg
ctgggtgtggtggatttgctgcaatttcactttatggatcccccacctcaggataatata
ctcaactcgttgtatcagctgtggatacttggtgcgctggatcatactggcgcactaacg
ccgctcggacggcagatggctgaatttccgcttgatccaccgcagtgccaaatgctaatt
gtttcctgtcaaatggagtgcagcgcggaggtgcttataattgtgtccatgctttccgtt
ccatccattttctatcggccaaagggtcgcgaagaggaggcagacggagtgcgtgagaag
tttcaagtgccggaatccgaccatctcacctatctaaatgtgtacctgcaatggaagcaa
aataattataattccagttggtgcaacgagcatttcatacacgttaaggcaatgcgcaaa
gtacgcgaagtacgtcaacagctcaaggacatcatggtacagcaaaaacttaatgtaaaa
tcatgtggcactgattgggatattgtgcgcaaatgcatttgttcggcatacttttatcag
gcagcgcgtctcaaaggcatcggcgaatatgttaacttgcgtacgggcatgccttgtcat
ctgcatcccacctcagcgttgtatggtcttggcacaacacccgactatgttgtgtatcat
gagcttgtaatgaccgctaaggagtatatgcaatgtgctaccgctgtcgatggttattgg
ctggcggagctgggtcctatgtttttctctgttaaggagactggtcgcagtgggcgtgag
aaaaagaagcaggctgctgagcatttaaaagaaatggaaactcaaatgctattggcgcag
gagcaaatggaggagcgcaaaatgcaggcggcgcaacgcgaggagcaaatgacgccgaaa
caagaaattataacgcctggcgatgccacgcctagacgtactccggcgcgcattggttta
taa
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