Rhagoletis zephyria (snowberry fruit fly): 108366049
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Entry
108366049 CDS
T08513
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108366049
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108366049
Spliceosome [BR:
rze03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108366049
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
ResIII
CMS1
SNF2-rel_dom
KH-I_KHDC4-BBP
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108366049
NCBI-ProteinID:
XP_017475801
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MSDWEEESWDDGGQTGTKKHEAYNSQNNSFSKGSDKAQRYRDSHNRGSDRYPHDGEKRGQ
NDQRHKYSESINIPSDCVGLVIGRAGSNIQRVQNDFNVRVDLDKRSGTATISGNSEQDVQ
DAYNYIKDQLESNNNKRGGGGGNYQANNGKGGGRSNSIYNFQLKETKQSGYYEDRSEKPY
DEEDKVQSGFTGVIDWDALNKKAEEERALRWAKCPPLTKNFYNEDPEVTNLMPEEVERIR
EESNHITVSRVFKQDDVPENIPNPIWKFEQCFAAYPDLMEEIYKQDFVKPSPIQSQAWPI
LLKGEDMIGIAQTGTGKTLAFLLPAMIHTEYQSTPRTQRGGPNVLVLAPTRELALQIEKE
VNKYSFRGMKAVCVYGGGNRREQISNVQGGVEIIICTPGRLNDLIEASIINVSSITYLVL
DEADRMLDMGFEPQIRKVLLDIRPDRQTVMTSATWPPGVRRLAQSYMSNPIQVCVGSLDL
AATHTVKQIIEIMDDGDKFFAIQQFVRNMKKNDKAIVFCGKKTRADDLSSDLTLEGVLCT
CIHGSREQADREQAIADISSGQVRLLIATDVASRGLDIDDITHVVNFDFPRNIEEYVHRV
GRTGRAGRTGTSISFITRNDWGVAKELISILEEAGQEVPDDLRDMADRFKAMKDRRANEM
SKFNNNFRDRNAGERRGSRGGSGSGRGRRDRY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattgggaagaagaaagctgggatgatggaggccaaactggcactaagaagcat
gaggcctataatagccagaataactcattttccaaagggagtgacaaagcccagcggtac
cgtgacagccacaatcgagggagtgatcgctatccacatgacggggaaaaacgtggtcaa
aacgatcaaaggcataagtatagtgaatctatcaatattccatcggactgtgttggtctc
gtcattggtcgagctggttcgaatattcaacgtgtacaaaatgacttcaacgtccgagta
gatcttgacaaaaggagcggcacagcaacgattagtggaaatagcgagcaagatgttcaa
gatgcatacaattatataaaggatcaattggaatcaaataataataaacgagggggcggt
ggtggcaattatcaagccaataatggcaaaggcggcggaaggtcaaattccatatataat
tttcaactaaaggaaacgaaacagagtggttactatgaggatagatcggaaaaaccatac
gatgaggaagacaaagttcagtcaggttttaccggagttatcgattgggatgccctgaat
aaaaaagcggaagaagaacgtgcattacgctgggctaagtgcccacccctgacaaaaaat
ttctataatgaagatccggaagtaacaaaccttatgccagaagaagtcgaacgcatccga
gaagaaagtaatcatatcaccgtatctcgagtattcaagcaagacgacgttcctgaaaac
attccgaatcctatttggaagttcgagcaatgctttgctgcttaccctgacttgatggag
gaaatttacaaacaggattttgtaaagccttcgcccatacagtcacaagcttggccaatt
ctcttgaaaggtgaagatatgattggcatcgcacaaactggtaccggcaaaacattggct
ttcttgttgcccgctatgattcacactgagtaccaaagcacaccgcgtacgcagcgtggg
gggcctaatgtattggtgcttgcgccaacacgagaactggctttacaaattgaaaaagaa
gtcaataaatattcgtttcgtggcatgaaagctgtgtgcgtatatgggggtggaaatcgg
cgagaacaaataagcaacgtgcagggtggagttgaaattattatttgcactccaggacga
ctgaacgatctcattgaagcttctattatcaacgtatctagtataacttatttggttttg
gatgaagctgatcgcatgttagatatggggtttgaaccacaaattcgtaaagtattgttg
gacatccgacctgataggcaaactgtgatgaccagtgccacgtggccacccggcgtgagg
cgcttagctcaaagctacatgagcaatccaatacaagtatgcgtaggttcactagatttg
gcagcgacacacacggttaaacaaattatcgaaataatggatgacggggataagtttttt
gcgattcagcaatttgtaagaaatatgaaaaagaatgacaaagctatagtcttttgcggg
aagaaaactcgcgctgacgatttgtccagtgatttgacgctggagggtgttttatgcaca
tgcatacatggctctagagaacaggctgatcgagaacaggccattgctgacataagttcg
ggacaagtaaggttgttgatagcaacagacgtcgcttctaggggactagatattgatgac
attacacatgtagtgaatttcgattttcctcgcaatattgaggaatatgtacatcgtgta
gggcgtaccggacgcgctggccgcactggaacttccatcagttttattactcggaatgac
tggggtgttgctaaagaacttataagtatattagaagaagctggccaggaagtaccggat
gatcttcgagatatggcagatcgtttcaaggcaatgaaggatcgacgtgcaaatgagatg
tcaaagtttaataataactttcgtgatcgcaatgccggcgaaaggcggggctctcgcggc
ggaagtggaagcggtcgaggacgccgcgatcgttattaa
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