Rhagoletis zephyria (snowberry fruit fly): 108366151
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Entry
108366151 CDS
T08513
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04382
Cornified envelope formation
rze04512
ECM-receptor interaction
rze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108366151
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108366151
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108366151
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rze04147
]
108366151
00536 Glycosaminoglycan binding proteins [BR:
rze00536
]
108366151
Exosome [BR:
rze04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108366151
Glycosaminoglycan binding proteins [BR:
rze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108366151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108366151
NCBI-ProteinID:
XP_017475949
LinkDB
All DBs
Position
Unknown
AA seq
1780 aa
AA seq
DB search
MMEPHWKRLIFAAAIAGALMSADAQFWKNTDTGAIYNPPNHYRDESTPPRSPIDDSYAII
DTVTSNRQGPPRNCTSGTVGCIPKCFAEKGNRGFPGEAGPPGPTGLPGYPGPEGPPGDKG
QKGDPGPLGPRGYKGERGVPGIPGMPGVPGVQGISGNPGTTGAPGKDGCDGQDGIPGLQG
LSGMAGPRGYPGQPGVKGEKGEPAKENGDYAKGEKGEPGFAGRSGNPGPEGQQGPKGDRG
DTGPYGPSGPRGDRGLKGEKGAPCFAPPQPGKKGEKGEKGEPASVKHSTTEQTIMGEKGE
RGEKGDSGTPGPKGDPGYTGETGRDGMKGEKGLPGGPGDRGRQGNFGPPGPAGQKGDRGE
TGLNGLSGKPGQKGEPGLPGRPGERGLLGPPGPPGGGRGSPGAPGPKGPRGYTGSPGPKG
LDGVDGPPGLQGFPGPKGGPGLPGRPGVEGPPGDKGEKGNAGRTGPPGPVGPMGHTGPPG
PEGQKGEPGYPGIGEVGPKGDDGTPGIPGLKGQKGERGFKGNAGAPGDSKFGRPGSPGRA
GLPGQKGDQGRPGFPGQKGDMGLKGDAGGKCSSCPPGFKGDKGDRGLDGIPGQPGLRGPP
GALGAPGERGADGIAGMDGPPGEKGEDGRDGLPGAEGPAGKDAIVDLSLVRGEKGEKGDR
GYPGAPGLKGDRGEAGFPGISGVKGEIGAKGDKGFPGPPGVDGIPGNPGRDGRDGLPGLS
IKGEPGRPGRDGIKGDKGTSGYSGQKGDPGTCDAAMLTVPAKGNKGDRGIPGMPGPMGPM
GDKGDQGFQGLKGEMGPQGPVGPVGPRGLTGPRGERGSPGVMGAPGNPGKDGLRGPPGRN
GERGQKGEQGISVAGPPGPQGRDGLSGLKGDRGAPGAYGPPGPDGAVGYPGDKGDAGLPG
ATGLTGAVGPKGDTGPLGPPGPQGPPGKPGVDGVQGRDGAKGEPGNPGWVGMPGSKGDRG
APGNDGPKGFPGANGPPGKRGAPGPAGIPGTKGDKGEIGLTGNDGLTGPRGPPGAPGPMG
IKGDIGPQGLPGTDGRPGLDGEKGAQGLPGFDGAQGLPGDAAEKGQKGEPGLSGLRGPEG
LPGAPGLPGEKGFPGMSIHGSPGAKGDKGDRGRDGIDGRDGISGAKGEAGFPGMNGQKGD
KGDMGLPGAPGAPGLDGRPGETGTPGPVGYSGAKGDKGDHGYPGLQGVKGDKGATGFPGL
SGPLGPKGERGFPGQSGRDAQPITIKGDKGEMGEFGVVGLPGPIGLKGNQGLPGLSGQKG
ERGLPGPLGIPGLNGAPGLKGDQGPVGEPGAPGPAIKGEKGLPGRSGKNGREGAPGSIGQ
KGEKGLPGLAGMPGLVGLPGPVGPSGPKGERGQMGLPGRDGADGLPGAPGLKGDMGFPGP
KGERGLAGFEGQKGEKGEQGIRGPQGLPGLNGMKGDRGFPGLDGAPGPVGAPGEKGSTGP
KGRDGRDGVPGLSGQKGEPGLVPPPGPKGEPGHPGRDGEKGDRGPPGPRGLIGLQGERGE
KGDMGLTGLIGQIGRPGPKGEQGFPGPQGRDGSPGLPGPQGDTGAACTAAQDYLTGILLV
KHSQSEEIPRCPLGQIELWTGFSMLYVDGNDYAHNQDLGSAGSCVRRFSTLPVMSCGQNN
VCNYASRNDKTFWLSTSAPIPMMPINNQEISKYISRCVVCEAPANVIAVHSQSLTIPDCP
YGWESLWIGYSFVMHTAVGNGGGGQALASPGSCLEDFRATPFIECNGGKGHCHFYETMTS
FWLVTVENHEQFQRPAMQTLKAGNLLQRVSRCTVCIKNST
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccccactggaagcggctgattttcgccgctgcaatagctggagcattaatg
agcgcagatgcgcaattttggaaaaatacagatactggtgcgatctacaacccacccaat
cattacagagatgaatcaacacctccgcgttccccaatagacgatagttatgcgattatc
gatactgtaacctcaaatcgtcaaggaccgccaagaaattgtacatccggcacagttgga
tgcattccaaaatgtttcgcggaaaagggtaaccgtggttttcccggtgaagctggaccc
cccggaccgacgggcttgcctggttatccaggtcctgaaggtccacccggcgataagggc
caaaaaggcgatccaggtccgctaggtcctcgcggttataagggcgaacgaggtgttccc
ggtattcctggtatgcctggagtacctggcgtacaaggtatttccggaaatcccggtact
actggtgcgcctggaaaagatggttgcgatggccaagacggtatacccggtctacaaggt
ttgagtggtatggctggtccgcgcggctatccaggccagcctggcgttaagggtgagaaa
ggtgaaccggcaaaggaaaatggagattatgctaaaggtgaaaagggcgaacccggtttt
gctgggcgttctggcaatccaggccctgaaggtcaacagggtcctaagggcgatcgaggt
gatactgggccgtatggtccatcgggtcctcgtggtgatcgtggtttgaaaggtgaaaag
ggtgcaccatgctttgctccaccgcaacctggcaaaaaaggtgaaaagggcgagaaagga
gaacctgcatccgtgaaacactcaactaccgagcaaaccataatgggagaaaaaggtgaa
agaggcgaaaaaggtgattcaggtacacctggacccaaaggtgatcctggttatactgga
gaaacaggacgagatggtatgaagggtgaaaaaggcttgccgggcggtcctggcgataga
ggacgtcaaggtaatttcggaccccctggaccagccggtcagaagggtgaccgcggcgag
actggcttaaatggattgtctggtaaaccgggtcaaaagggtgaaccaggtcttccaggt
aggcccggagaacgtggtttgctaggtcctccaggtccacctgggggcggtcgaggctct
cccggcgcacctggccccaaaggcccacgtggatacactggttcgcctggtccaaaagga
ttggatggtgttgatggtcctcctggtctacagggtttccccggccctaagggtggccca
ggtttacctggccgtcctggtgttgaaggcccacctggtgataaaggagagaaaggtaat
gcaggtcgcacaggtccacccggccccgttggtcccatgggtcatactggaccaccagga
cctgaaggacagaaaggtgaacccggatatccaggcattggggaagttggccctaagggt
gacgatggtactcccggtattcctggtctgaagggtcaaaaaggtgaacggggtttcaaa
ggtaatgctggcgctcctggtgattctaaatttggacgtcctggttcacctggtcgtgca
ggcctgcctggccaaaagggagatcaaggccgtcctggttttcccggccagaaaggtgac
atgggtctcaaaggtgatgctggtggtaaatgctcgtcctgccctcctggtttcaagggc
gataaaggtgatcgcggtttggatggtattcctggccaacctggcttacgtggtcccccc
ggagctcttggtgcacctggcgaacgtggcgctgatggaatcgctggtatggatggacca
cccggtgaaaagggtgaagatggcagggacggacttcctggagctgaaggtcccgctggt
aaagatgcaattgtcgacttaagtcttgtcaggggagagaaaggtgaaaaaggtgataga
ggttatcctggtgcacccggcttaaaaggtgaccgtggtgaagccggatttcctggtatc
agcggcgttaaaggagaaataggtgctaaaggtgacaaaggtttcccaggtccaccaggt
gtggacggcatacctggaaacccaggacgcgatggacgtgatggtctccccggcttaagc
atcaagggtgaacctggtcgcccaggtcgcgatggaattaagggagacaaaggtacctct
ggatattctggacaaaagggagatccaggaacttgtgacgccgccatgttgacagtgcca
gctaaaggaaacaaaggtgatcgaggcatacctggaatgccaggtccaatgggccccatg
ggtgacaaaggtgaccaaggatttcaaggactgaaaggtgaaatgggtccacaaggtccg
gtgggacctgtaggaccacgaggtttaactggtccgcgtggtgagaggggtagtcctggt
gttatgggagcccctggaaaccctggaaaagatggacttagaggaccccctggaaggaat
ggggaacgcggccaaaagggagaacaaggcatctcagttgctggtccccctggaccacaa
ggccgcgatggcttatctggtcttaaaggagatcgaggagctcctggtgcttatggtcca
cctggtccagatggagctgttggatatcctggtgacaaaggtgatgccggtctgcctggc
gcaactggtttgactggagccgtcggccctaaaggtgatactggcccactgggaccacca
ggacctcaaggtccacctgggaaacctggtgtggatggtgtgcagggacgtgatggagca
aagggcgaacctggaaacccagggtgggttggcatgcccggatctaaaggcgaccgtggt
gctcctggcaatgatggacctaaaggtttccctggcgctaatggaccccctggaaagcgt
ggcgctcctggtcctgccggtattcctggtacgaagggagacaaaggtgaaattggtttg
actggtaatgacggtttaactggcccaagaggacctcccggcgctcctggcccaatgggc
attaaaggtgatattgggccacaaggccttcctggaactgacggtcgtcctggcttggat
ggagaaaagggtgctcaaggtttacccggtttcgatggtgcacaaggtttaccgggtgac
gcagctgaaaagggacaaaaaggtgaacctggcttatctggattgcgtggtcctgaaggt
cttcctggtgcacctggattgcctggcgaaaaaggttttccgggtatgtctattcacggc
agccctggtgcgaagggtgacaagggtgatcgaggacgtgatggcattgatggtcgcgat
ggcatatctggagcaaagggagaagcgggattccctggcatgaatggacaaaaaggtgat
aaaggtgacatgggcttacctggtgcaccaggagctcctggcttagatggaaggcctgga
gaaacaggcacgcctggccctgttggctattctggcgctaagggagacaagggagatcac
ggttatccaggtctgcagggtgtaaaaggtgacaagggtgctaccggctttcccggttta
tctgggcctctgggaccgaagggcgaacgcggttttcctggtcaaagcggtcgtgatgct
caacctatcaccattaaaggagacaaaggagaaatgggtgaatttggtgtggttggtttg
cctggtccaattggacttaaaggtaatcaaggtttgcccggattgagcggacaaaagggc
gaacgtggtctgcctggtccactgggcatacctggcttaaatggcgcacctggtttaaag
ggcgatcaaggccctgttggcgagcccggagcacctggacctgcaattaaaggagaaaaa
ggtttacctggaagatctggaaagaacggacgtgaaggtgctcctggttctattggacaa
aaaggcgaaaaaggacttcctggtctcgctggcatgcctggtttggttggtctgcctggt
cccgttggcccatctggtccaaaaggtgaacgtggtcaaatgggacttcccggacgtgat
ggtgctgatggtttacctggtgcgcctggcttgaagggtgatatgggtttcccaggtcct
aaaggagaacgaggtttggctggtttcgaaggacaaaagggtgaaaaaggagaacaaggt
atacgtggtccacaaggtttaccgggtctcaatggtatgaaaggcgatcgcggtttccca
ggtttagatggagcacctggaccagttggagcgcctggtgaaaagggatcaactggacct
aaaggtcgcgatggccgagacggcgtacctggattatctggccaaaaaggtgaacctggt
ctagtacccccaccaggacctaaaggtgaacctggacacccaggtcgcgacggcgagaaa
ggagatcgtggtccaccaggcccccgtggtttgattggcttacaaggtgaacgtggcgag
aaaggtgacatgggtttgactggtctcattggtcaaataggacggcccggacctaaaggt
gaacaaggtttcccaggcccacaaggccgtgacggttcgccgggtctgcccggcccacaa
ggagacacgggtgccgcttgcacagcagcacaagattatctgactggcatattgctggtt
aagcacagtcaatctgaagaaataccacgttgcccgctaggtcaaatcgaattatggaca
ggtttctcaatgttatacgtggacggtaacgattatgcgcacaaccaagatctcggatcg
gccggctcttgcgtgcgtcgcttctcaacactgccagtgatgtcatgtggccagaacaac
gtttgcaactacgcctcgagaaacgataagaccttctggctttcaacatccgctcccatt
ccaatgatgcctatcaacaaccaggaaattagcaaatatatatcgcgctgtgtggtgtgc
gaggcaccagcgaatgtcatcgctgtacacagccagtcgctaaccattcccgactgcccc
tatggatgggagagcctatggataggctacagcttcgttatgcatactgccgttggtaat
ggcggtggtggccaagcgctagcatcgcccggttcttgcttggaagatttccgcgccaca
ccattcatcgaatgcaatggcggcaagggtcactgccacttctacgaaacaatgaccagc
ttctggttggtcacagtcgagaaccatgaacagttccaacgtccagcaatgcaaacgctc
aaggctggaaatctgctacaaagagtatcgaggtgtacagtgtgtataaaaaattcgaca
taa
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