Rhagoletis zephyria (snowberry fruit fly): 108366151
Help
Entry
108366151 CDS
T08513
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04512
ECM-receptor interaction
rze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108366151
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108366151
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rze04147
]
108366151
00536 Glycosaminoglycan binding proteins [BR:
rze00536
]
108366151
Exosome [BR:
rze04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108366151
Glycosaminoglycan binding proteins [BR:
rze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108366151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108366151
NCBI-ProteinID:
XP_017475949
LinkDB
All DBs
Position
Unknown
AA seq
1780 aa
AA seq
DB search
MMEPHWKRLIFAAAIAGALMSADAQFWKNTDTGAIYNPPNHYRDESTPPRSPIDDSYAII
DTVTSNRQGPPRNCTSGTVGCIPKCFAEKGNRGFPGEAGPPGPTGLPGYPGPEGPPGDKG
QKGDPGPLGPRGYKGERGVPGIPGMPGVPGVQGISGNPGTTGAPGKDGCDGQDGIPGLQG
LSGMAGPRGYPGQPGVKGEKGEPAKENGDYAKGEKGEPGFAGRSGNPGPEGQQGPKGDRG
DTGPYGPSGPRGDRGLKGEKGAPCFAPPQPGKKGEKGEKGEPASVKHSTTEQTIMGEKGE
RGEKGDSGTPGPKGDPGYTGETGRDGMKGEKGLPGGPGDRGRQGNFGPPGPAGQKGDRGE
TGLNGLSGKPGQKGEPGLPGRPGERGLLGPPGPPGGGRGSPGAPGPKGPRGYTGSPGPKG
LDGVDGPPGLQGFPGPKGGPGLPGRPGVEGPPGDKGEKGNAGRTGPPGPVGPMGHTGPPG
PEGQKGEPGYPGIGEVGPKGDDGTPGIPGLKGQKGERGFKGNAGAPGDSKFGRPGSPGRA
GLPGQKGDQGRPGFPGQKGDMGLKGDAGGKCSSCPPGFKGDKGDRGLDGIPGQPGLRGPP
GALGAPGERGADGIAGMDGPPGEKGEDGRDGLPGAEGPAGKDAIVDLSLVRGEKGEKGDR
GYPGAPGLKGDRGEAGFPGISGVKGEIGAKGDKGFPGPPGVDGIPGNPGRDGRDGLPGLS
IKGEPGRPGRDGIKGDKGTSGYSGQKGDPGTCDAAMLTVPAKGNKGDRGIPGMPGPMGPM
GDKGDQGFQGLKGEMGPQGPVGPVGPRGLTGPRGERGSPGVMGAPGNPGKDGLRGPPGRN
GERGQKGEQGISVAGPPGPQGRDGLSGLKGDRGAPGAYGPPGPDGAVGYPGDKGDAGLPG
ATGLTGAVGPKGDTGPLGPPGPQGPPGKPGVDGVQGRDGAKGEPGNPGWVGMPGSKGDRG
APGNDGPKGFPGANGPPGKRGAPGPAGIPGTKGDKGEIGLTGNDGLTGPRGPPGAPGPMG
IKGDIGPQGLPGTDGRPGLDGEKGAQGLPGFDGAQGLPGDAAEKGQKGEPGLSGLRGPEG
LPGAPGLPGEKGFPGMSIHGSPGAKGDKGDRGRDGIDGRDGISGAKGEAGFPGMNGQKGD
KGDMGLPGAPGAPGLDGRPGETGTPGPVGYSGAKGDKGDHGYPGLQGVKGDKGATGFPGL
SGPLGPKGERGFPGQSGRDAQPITIKGDKGEMGEFGVVGLPGPIGLKGNQGLPGLSGQKG
ERGLPGPLGIPGLNGAPGLKGDQGPVGEPGAPGPAIKGEKGLPGRSGKNGREGAPGSIGQ
KGEKGLPGLAGMPGLVGLPGPVGPSGPKGERGQMGLPGRDGADGLPGAPGLKGDMGFPGP
KGERGLAGFEGQKGEKGEQGIRGPQGLPGLNGMKGDRGFPGLDGAPGPVGAPGEKGSTGP
KGRDGRDGVPGLSGQKGEPGLVPPPGPKGEPGHPGRDGEKGDRGPPGPRGLIGLQGERGE
KGDMGLTGLIGQIGRPGPKGEQGFPGPQGRDGSPGLPGPQGDTGAACTAAQDYLTGILLV
KHSQSEEIPRCPLGQIELWTGFSMLYVDGNDYAHNQDLGSAGSCVRRFSTLPVMSCGQNN
VCNYASRNDKTFWLSTSAPIPMMPINNQEISKYISRCVVCEAPANVIAVHSQSLTIPDCP
YGWESLWIGYSFVMHTAVGNGGGGQALASPGSCLEDFRATPFIECNGGKGHCHFYETMTS
FWLVTVENHEQFQRPAMQTLKAGNLLQRVSRCTVCIKNST
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccccactggaagcggctgattttcgccgctgcaatagctggagcattaatg
agcgcagatgcgcaattttggaaaaatacagatactggtgcgatctacaacccacccaat
cattacagagatgaatcaacacctccgcgttccccaatagacgatagttatgcgattatc
gatactgtaacctcaaatcgtcaaggaccgccaagaaattgtacatccggcacagttgga
tgcattccaaaatgtttcgcggaaaagggtaaccgtggttttcccggtgaagctggaccc
cccggaccgacgggcttgcctggttatccaggtcctgaaggtccacccggcgataagggc
caaaaaggcgatccaggtccgctaggtcctcgcggttataagggcgaacgaggtgttccc
ggtattcctggtatgcctggagtacctggcgtacaaggtatttccggaaatcccggtact
actggtgcgcctggaaaagatggttgcgatggccaagacggtatacccggtctacaaggt
ttgagtggtatggctggtccgcgcggctatccaggccagcctggcgttaagggtgagaaa
ggtgaaccggcaaaggaaaatggagattatgctaaaggtgaaaagggcgaacccggtttt
gctgggcgttctggcaatccaggccctgaaggtcaacagggtcctaagggcgatcgaggt
gatactgggccgtatggtccatcgggtcctcgtggtgatcgtggtttgaaaggtgaaaag
ggtgcaccatgctttgctccaccgcaacctggcaaaaaaggtgaaaagggcgagaaagga
gaacctgcatccgtgaaacactcaactaccgagcaaaccataatgggagaaaaaggtgaa
agaggcgaaaaaggtgattcaggtacacctggacccaaaggtgatcctggttatactgga
gaaacaggacgagatggtatgaagggtgaaaaaggcttgccgggcggtcctggcgataga
ggacgtcaaggtaatttcggaccccctggaccagccggtcagaagggtgaccgcggcgag
actggcttaaatggattgtctggtaaaccgggtcaaaagggtgaaccaggtcttccaggt
aggcccggagaacgtggtttgctaggtcctccaggtccacctgggggcggtcgaggctct
cccggcgcacctggccccaaaggcccacgtggatacactggttcgcctggtccaaaagga
ttggatggtgttgatggtcctcctggtctacagggtttccccggccctaagggtggccca
ggtttacctggccgtcctggtgttgaaggcccacctggtgataaaggagagaaaggtaat
gcaggtcgcacaggtccacccggccccgttggtcccatgggtcatactggaccaccagga
cctgaaggacagaaaggtgaacccggatatccaggcattggggaagttggccctaagggt
gacgatggtactcccggtattcctggtctgaagggtcaaaaaggtgaacggggtttcaaa
ggtaatgctggcgctcctggtgattctaaatttggacgtcctggttcacctggtcgtgca
ggcctgcctggccaaaagggagatcaaggccgtcctggttttcccggccagaaaggtgac
atgggtctcaaaggtgatgctggtggtaaatgctcgtcctgccctcctggtttcaagggc
gataaaggtgatcgcggtttggatggtattcctggccaacctggcttacgtggtcccccc
ggagctcttggtgcacctggcgaacgtggcgctgatggaatcgctggtatggatggacca
cccggtgaaaagggtgaagatggcagggacggacttcctggagctgaaggtcccgctggt
aaagatgcaattgtcgacttaagtcttgtcaggggagagaaaggtgaaaaaggtgataga
ggttatcctggtgcacccggcttaaaaggtgaccgtggtgaagccggatttcctggtatc
agcggcgttaaaggagaaataggtgctaaaggtgacaaaggtttcccaggtccaccaggt
gtggacggcatacctggaaacccaggacgcgatggacgtgatggtctccccggcttaagc
atcaagggtgaacctggtcgcccaggtcgcgatggaattaagggagacaaaggtacctct
ggatattctggacaaaagggagatccaggaacttgtgacgccgccatgttgacagtgcca
gctaaaggaaacaaaggtgatcgaggcatacctggaatgccaggtccaatgggccccatg
ggtgacaaaggtgaccaaggatttcaaggactgaaaggtgaaatgggtccacaaggtccg
gtgggacctgtaggaccacgaggtttaactggtccgcgtggtgagaggggtagtcctggt
gttatgggagcccctggaaaccctggaaaagatggacttagaggaccccctggaaggaat
ggggaacgcggccaaaagggagaacaaggcatctcagttgctggtccccctggaccacaa
ggccgcgatggcttatctggtcttaaaggagatcgaggagctcctggtgcttatggtcca
cctggtccagatggagctgttggatatcctggtgacaaaggtgatgccggtctgcctggc
gcaactggtttgactggagccgtcggccctaaaggtgatactggcccactgggaccacca
ggacctcaaggtccacctgggaaacctggtgtggatggtgtgcagggacgtgatggagca
aagggcgaacctggaaacccagggtgggttggcatgcccggatctaaaggcgaccgtggt
gctcctggcaatgatggacctaaaggtttccctggcgctaatggaccccctggaaagcgt
ggcgctcctggtcctgccggtattcctggtacgaagggagacaaaggtgaaattggtttg
actggtaatgacggtttaactggcccaagaggacctcccggcgctcctggcccaatgggc
attaaaggtgatattgggccacaaggccttcctggaactgacggtcgtcctggcttggat
ggagaaaagggtgctcaaggtttacccggtttcgatggtgcacaaggtttaccgggtgac
gcagctgaaaagggacaaaaaggtgaacctggcttatctggattgcgtggtcctgaaggt
cttcctggtgcacctggattgcctggcgaaaaaggttttccgggtatgtctattcacggc
agccctggtgcgaagggtgacaagggtgatcgaggacgtgatggcattgatggtcgcgat
ggcatatctggagcaaagggagaagcgggattccctggcatgaatggacaaaaaggtgat
aaaggtgacatgggcttacctggtgcaccaggagctcctggcttagatggaaggcctgga
gaaacaggcacgcctggccctgttggctattctggcgctaagggagacaagggagatcac
ggttatccaggtctgcagggtgtaaaaggtgacaagggtgctaccggctttcccggttta
tctgggcctctgggaccgaagggcgaacgcggttttcctggtcaaagcggtcgtgatgct
caacctatcaccattaaaggagacaaaggagaaatgggtgaatttggtgtggttggtttg
cctggtccaattggacttaaaggtaatcaaggtttgcccggattgagcggacaaaagggc
gaacgtggtctgcctggtccactgggcatacctggcttaaatggcgcacctggtttaaag
ggcgatcaaggccctgttggcgagcccggagcacctggacctgcaattaaaggagaaaaa
ggtttacctggaagatctggaaagaacggacgtgaaggtgctcctggttctattggacaa
aaaggcgaaaaaggacttcctggtctcgctggcatgcctggtttggttggtctgcctggt
cccgttggcccatctggtccaaaaggtgaacgtggtcaaatgggacttcccggacgtgat
ggtgctgatggtttacctggtgcgcctggcttgaagggtgatatgggtttcccaggtcct
aaaggagaacgaggtttggctggtttcgaaggacaaaagggtgaaaaaggagaacaaggt
atacgtggtccacaaggtttaccgggtctcaatggtatgaaaggcgatcgcggtttccca
ggtttagatggagcacctggaccagttggagcgcctggtgaaaagggatcaactggacct
aaaggtcgcgatggccgagacggcgtacctggattatctggccaaaaaggtgaacctggt
ctagtacccccaccaggacctaaaggtgaacctggacacccaggtcgcgacggcgagaaa
ggagatcgtggtccaccaggcccccgtggtttgattggcttacaaggtgaacgtggcgag
aaaggtgacatgggtttgactggtctcattggtcaaataggacggcccggacctaaaggt
gaacaaggtttcccaggcccacaaggccgtgacggttcgccgggtctgcccggcccacaa
ggagacacgggtgccgcttgcacagcagcacaagattatctgactggcatattgctggtt
aagcacagtcaatctgaagaaataccacgttgcccgctaggtcaaatcgaattatggaca
ggtttctcaatgttatacgtggacggtaacgattatgcgcacaaccaagatctcggatcg
gccggctcttgcgtgcgtcgcttctcaacactgccagtgatgtcatgtggccagaacaac
gtttgcaactacgcctcgagaaacgataagaccttctggctttcaacatccgctcccatt
ccaatgatgcctatcaacaaccaggaaattagcaaatatatatcgcgctgtgtggtgtgc
gaggcaccagcgaatgtcatcgctgtacacagccagtcgctaaccattcccgactgcccc
tatggatgggagagcctatggataggctacagcttcgttatgcatactgccgttggtaat
ggcggtggtggccaagcgctagcatcgcccggttcttgcttggaagatttccgcgccaca
ccattcatcgaatgcaatggcggcaagggtcactgccacttctacgaaacaatgaccagc
ttctggttggtcacagtcgagaaccatgaacagttccaacgtccagcaatgcaaacgctc
aaggctggaaatctgctacaaagagtatcgaggtgtacagtgtgtataaaaaattcgaca
taa
DBGET
integrated database retrieval system
