Rhagoletis zephyria (snowberry fruit fly): 108366152
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Entry
108366152 CDS
T08513
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04512
ECM-receptor interaction
rze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108366152
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108366152
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rze04147
]
108366152
00536 Glycosaminoglycan binding proteins [BR:
rze00536
]
108366152
Exosome [BR:
rze04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108366152
Glycosaminoglycan binding proteins [BR:
rze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108366152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108366152
NCBI-ProteinID:
XP_017475953
LinkDB
All DBs
Position
Unknown
AA seq
1841 aa
AA seq
DB search
MQLPRGRIGLLGGGGAQGRICHTYLWSLIFAIYLIAFVRNDYSFADAKESNKNCNNTICD
CKGLKGRPGAIGTKGYPGIEGPPGEVGPMGPFGRRGEYGDPGEYGEQGEKGHRGDIGELG
LAGRPGLAGPPGEDGPKGISGIDGCDGKSGLQGSPGLPGDNGRRGPMGKPGPAGPTGDAG
EGGINSKGTKGSRGERGPDGVDGQFGYIGMKGYKGDIGYPGIEGSKGELGLKGYKGEMAE
PANLQLFAEGELGEKGEPGDGEESEWNFGKVIKGYKGDKGPVGWPGTGGAPGEPGDVGPT
GLPGIRGDTGESGERGKPGKSGEPGFPGEKGVKGAPGYNGLDGEDGLKGEHGDDGFDGIP
GIQGPAGPPGIYDPNLDISFPGPQGPQGDLGPPGNPGLSGIPGRQGRPGPMGPSGPPGDR
GLDGAPGRRGDTVKGDDGDYGYMGPPGPLGPPGNPGLPGRPGQRGQPGLNLRGPKGFAGQ
LGQPAADGYRGDRGEVGLPGDKGASGDGLNIVGPPGSDGPPGIRGQPGLDGVPGWPGLVG
DKGIRGDDCGICPAGPRGLKGLQGDAGYPGLNGLRGLVGLTGERGPKGWAGSPGPRGRKG
IPGPPGASGGMGRPGPPGRPGIARRIKNIAAPERGDIGDVGERGEQGATGDRGVDGRAGL
YGAKGETGLRGDFGDIGRPGRDGLPGRPGYEGKPGLDASTPKLYLVGNPGRDGLIGERGE
PGSEGPKGDKGEPNPGEIYDNKGEPGDKGYIGLPGEIGLKGEMGEVGIQGFPGDIGLPGP
TIPGPVGAKGWPGLAGEYGQHGAPGNPGIDGLPGLDGSLGPKGLRGEPGRYVLPGEMGPD
GYPGVKGVEGDIGFPGAPGPAGRPGGKGVKGSKGDDGAFGLQGLPGVKGQRGDYLVGYPG
LEGAPGRDGRTAPHGRKGYKGEIGMPGPVGVQGAKGSIGFPGRRGRIGDQGRPGEPGQTG
SPGWVGIPGEQGDRGDIGYDGRMGDMGPRGPFGYMGPKGQSGDVGPIGRAGAPGIPGRRG
ESGDRGVPGRPGAKGNAAYSGIKGENGEAGLMGPRGYDGLSGAKGERGPEGDTPIPLDGL
PGIKGETGVPGRYGLDGLPGLKGEQGDFGLTGLTGEVGDRGDEGLAGYRGRNGLPGRKGA
MGAIGLPGAVGAKGDGGESGYPGLPGLVGDQGDAGLPGDIGAQGERGDIGYPGRPGILLR
GFAQRGDKGEQGFQGEQGPIGEQGPEGSSGYPGLKGERGDIGFAGAPGVDGYPGVKGEIG
DKGYRGATGPIASFIENGDEGEPGYDGFPGRPGRVGPKGAPGEQGEYGENGLIGLPGISI
GGPKGQIGDVGYPGPPGRNGLPGMTGLKGERGDYGYQGERGELGFAIRGRNGDVGDIGLM
GEAGYDGLKGEQGEQGFQGRPGPLGFRGPRGPQGDAGWSGIDGLDGLEGPKGERGVTYDF
SFARPGDRGEPGLDGFKGEIGDIGEIGETGSLGWRGAKGYQGDQGFMGASGPDGPQGERG
MPGLEGLAGLPGIPGQKGLAGAPAPPPPLPKSRGFVFTRHSQSVRIPECPVNTNKLWEGF
SLAGNIGSSMAIGQDLGQSGSCMMRFTTMPYMFCDVNNVCNYAQNNDDSLWLSTAEPMPM
NMAPIQSLDLMKFISRCVVCETTTRIIALHSQSMSIPDCPNGWEEMWTGYSYLMTTTDNT
GGIGQNLVSPGSCLEDFRANPVIECHGHGRCNYYDPLASFWLAVIEEHEQWLQPKQQTLK
ADQTSKVSRCTVCRRKNDSYIRRLSSVQVEATEFRRGPERFAPEPRGVPVPIRRPPQLPP
RNTYYRPNYRRPDQNGRPYNYAGNQYGANRIRRPREDTYAP
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgcccaggggccgcataggtctcttgggtggtggtggcgcccaaggccgaata
tgccacacatatctgtggtcgctgatattcgcaatctatctgattgcattcgtgagaaat
gattacagcttcgctgatgccaaggaatcgaacaagaattgcaataacaccatttgtgat
tgcaaggggctaaaaggtcgtccaggtgctattggtacaaaaggttaccctggcattgag
ggtcctcccggcgaggtgggtccgatgggtcctttcggacgtcgcggcgaatacggtgat
cccggcgagtatggcgaacaaggcgaaaaaggacatcgaggtgatataggagaactgggc
ttagctggccgacctggactagcgggtccacctggcgaagacggccctaagggcattagt
ggcatagacggttgtgacggtaagtccggtctgcaaggttctcccggtttacctggagat
aatggtcggcgtggaccaatgggcaaacctggtccagcagggcccaccggagatgctggt
gagggtggtattaattcgaaaggtaccaaaggtagtcgtggtgaacgtggtcctgatggt
gtagacggccaatttggctatattggaatgaagggttacaaaggtgatatcggctatcct
ggtattgaaggttccaaaggtgagctgggcctgaagggctataaaggagaaatggctgaa
ccggccaacctgcaacttttcgctgaaggtgaactgggtgaaaagggtgaacctggagat
ggcgaagagagtgaatggaacttcggcaaagtgataaaagggtataagggtgataaaggt
ccagttggctggccgggtactggcggagctccaggtgagccaggagatgtaggtccaaca
ggcttgcctggaattcgaggtgacactggagaatcgggtgagcgcggaaagccgggtaaa
tctggtgagcctggtttccctggcgagaagggtgttaaaggtgcaccgggctataatggt
ctcgatggcgaagatggtttaaagggtgaacatggcgatgatggtttcgacggcattccc
ggtatacaaggtccagccggtccgcctggcatttacgatcctaatttggatatatcattc
ccgggcccacagggtccccagggtgatcttgggccacctggtaacccaggtctatctggc
atacctggaagacaaggtcgtcctgggccgatgggtccttcaggaccacccggcgacaga
ggcttggatggtgcacccggtcgaagaggagataccgttaaaggtgatgatggcgattac
ggctatatgggacctcctggcccattgggtccgcctggaaatcctgggctacctggccgc
cctggtcaaagaggacaaccaggcctgaatttgagggggcctaaaggtttcgctgggcag
ctaggtcagccggcagcagacggttaccgcggagatcgtggtgaagttggattgcccgga
gacaaaggtgcatctggagatggtttgaatatcgttgggccgcctggttctgatggaccg
cctggtatacgagggcaacctggtcttgatggtgttcccggctggccaggtttggttggc
gacaaaggtatacgtggtgatgattgtggaatatgcccagctgggccacgtggcttgaag
ggtcttcagggtgatgctggttatccgggattgaacggtttacgaggtcttgtaggtcta
actggcgaaagaggtccaaaaggctgggctggcagtccaggtccgagaggtcgaaaagga
attccaggcccccctggcgccagtggaggtatgggtcgtcctggacctcctggacgcccg
ggtatcgcgcgtagaatcaaaaacattgcagcaccggaaaggggcgatataggtgatgtt
ggtgagcgcggcgaacaaggtgctactggtgatcgcggtgtggatggaagggctggcctg
tacggtgcaaagggtgaaactggattgcggggggatttcggagatattggccgtccgggt
agagacggtttacccggtagacctggctacgaaggaaaacctggtcttgatgcttcgaca
ccaaagttatatttggttggtaatcctggaagagatggtctgataggtgaacgtggcgag
ccaggcagcgagggtccaaaaggtgataaaggtgagcctaatcctggcgaaatctacgac
aacaaaggtgaacctggcgacaagggatatattggactgcccggtgaaatcggactgaaa
ggtgaaatgggagaagttggaattcagggatttccaggtgacattggattgcctggtcca
acgatcccaggacctgtaggtgctaaaggatggcctggcttggctggtgaatatggacaa
cacggtgctcctggaaaccccggtatagatggcttacctggtctagacggttcgctaggt
cctaaaggtctacgtggtgagccagggcgatatgtattgcccggtgaaatgggtcctgat
ggatatcccggcgttaagggtgtagaaggtgacatcggatttccaggtgctcctggacct
gctggcagacctggtggcaagggcgttaaaggttcgaaaggcgatgatggcgcatttgga
ttgcaaggtttgccaggtgttaaaggtcaacgtggtgattacttggttggctatcctggt
cttgagggagcgccgggaagagacggcaggaccgccccccatgggcgcaaaggttacaag
ggtgaaattggtatgccggggccagtcggagtacaaggtgccaaaggtagcattggattc
ccaggacgacggggtcgtattggagaccaaggcaggcctggtgagccaggccaaacaggt
agccctggatgggtaggaatacccggagaacaaggcgatcgcggtgatatcggctatgat
ggtagaatgggtgacatgggaccacgaggaccctttggctatatgggaccaaaaggtcaa
tcgggagatgtgggtccgataggtcgcgctggagcaccaggaattcccggacgcagaggt
gaatcaggtgatcgtggtgttcctggacgtcctggcgccaaaggtaacgcagcatatagc
ggcattaagggtgagaatggtgaagcaggtctgatgggaccacggggctatgatggatta
tccggcgcaaagggagaacgcggtccggagggcgatacacccataccattagatggacta
cctggcataaaaggagaaacgggtgtacccggacgatatggcttggatgggttacctggt
cttaagggggagcaaggtgattttggcttaacgggccttaccggagaggtaggggataga
ggagacgagggattggctggatatcgtggccgcaatggcttgcccggtagaaaaggtgct
atgggagctatagggttacctggcgcggttggagcgaaaggtgatggtggtgaaagtggt
taccccggtttgcccggtttggtaggcgaccaaggcgatgctggtcttcccggagatata
ggagcacaaggagagcgaggtgatataggttacccaggtcgacctggtatattgttacgt
ggtttcgcacaacggggtgacaaaggtgaacaaggcttccagggtgaacaaggtcctatt
ggcgaacaaggtcccgagggctcttccggatatccaggacttaaaggcgaacgaggagat
attggttttgctggagcaccaggtgtggatggatatcctggtgtaaaaggagaaatagga
gacaaaggctatcgtggcgccactggtccaatagcttcattcatcgagaatggtgacgaa
ggtgagccgggttatgatggcttccccggacgaccaggacgcgtaggtcccaagggagca
cctggcgaacaaggtgaatatggagaaaatggtttaatcggtttgccaggtatttcgatt
ggcggaccaaaaggccaaattggtgatgtcggctatcctggcccgccaggacgtaatggt
ttgccgggcatgactggccttaaaggagagcgcggcgactatggttaccaaggtgaacgc
ggtgagctcggcttcgctattcgcggcagaaatggtgatgttggtgatatcggtttgatg
ggagaagccggatatgacgggctaaagggtgaacaaggagagcaaggattccaaggacgt
ccgggtccgcttggcttcagaggtccacgcgggccacagggtgatgctggttggagtggt
atcgatggtttggatggtcttgaaggacccaaaggtgaacgcggtgttacatatgatttc
agtttcgcgcggcccggtgatcgcggagaacctggtcttgatggcttcaaaggcgaaata
ggcgacattggtgagatcggtgaaactggaagtttaggttggcgcggtgcaaagggttac
caaggcgatcaaggcttcatgggtgcttcgggaccagatggtcctcaaggtgaacgaggt
atgcccggtctagaaggtctcgcggggttgcctggaataccaggacaaaaaggtctagct
ggtgcacctgctccaccaccaccgctaccgaaaagtcgcggatttgtgtttacacgtcac
tcgcaatcggtgcgcatacccgagtgtccggtgaatacgaacaagttatgggaaggcttc
tcactggcaggcaatattggtagcagcatggccatcggacaagatctgggacaatctggc
tcctgcatgatgcgtttcaccacaatgccgtacatgttctgcgatgtgaacaatgtgtgc
aattacgcgcagaacaacgatgacagcttgtggctttccactgctgaacccatgccgatg
aacatggccccgatacaatccttagatctgatgaaattcatatcgcgttgtgtagtctgc
gaaacgaccactcgtatcatagcgctacacagccaaagcatgagcataccagactgtccg
aatggttgggaagaaatgtggaccggttacagttatttgatgactacaactgataacacc
ggcggcattggtcagaatttggtctcgccgggttcatgcttagaagatttccgtgccaac
ccggtcatcgagtgtcatggacatggccgttgcaactattacgacccactcgcttccttc
tggctggctgtgatcgaggaacacgaacagtggctgcaaccgaagcagcaaacgctaaag
gctgatcagaccagcaaagtgagccgttgcaccgtttgccgccgcaagaatgactcgtac
atccgtcgcttgtcttcggtacaggtggaggctactgaattccgtcgcggtcctgaacgc
tttgcgccagagccccgaggcgttccggtgccaatacggcgaccaccacagctgccgccg
aggaacacctactatcgcccgaactatcgacgtccggaccagaatggtcgcccctacaac
tatgccggcaaccagtatggcgccaatcgcatacgacgccctcgcgaagatacatatgcg
ccgtag
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