Rhagoletis zephyria (snowberry fruit fly): 108366596
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Entry
108366596 CDS
T08513
Name
(RefSeq) chromodomain-helicase-DNA-binding protein Mi-2 homolog
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rze03036
]
108366596
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108366596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD-1st_NSD
HTH_Hrp3
PHDvar_NSD
PHD_2
DEAD
AIM3
HMG_box
AAA_22
Motif
Other DBs
NCBI-GeneID:
108366596
NCBI-ProteinID:
XP_017476534
LinkDB
All DBs
Position
Unknown
AA seq
2075 aa
AA seq
DB search
MAPKDDDTDSEPEAEAMDTSSPAATATRHRNDSEDFEGQQNNNRNSGHNQEEEEEDTDTE
APAAAAAAADDGNATETEMNAEEEQEQLLLQEKQSSSSKKLKKRKLRDSSESSSAVAASA
AGKQRKSKKKKRKKAAAEYDYDDDDDDFDDLGDDFEEEVPGAYGSALYNPSAPIIDPNTG
RAGSTPKSRRLKVKSQKTVAEICAEHGLVDVDYEFTDVDYQNLTSYKLFSQHIRPLIAKC
NPKIQMPKMTTFMSAKWREFTAAMPSTMAAAAAAAEAAAAATAAANSAEASESVAAADLQ
SPSVLEEEPMDTSLTEPTGKKSKKGSSNSSFAATATDVSATVASTSSTNNSNSKGKSVPT
LKIKLGALSKRKRAAAAAAAASSEEEEDSPSELNKSDVEFEAALEEAQLLASPPPSSKSG
GKSKHGKGGGFKKGSSLSSKNKTGARKKTKTTDSFPGSSASRDDSDYENGGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLEPELEEAPEGKWSCPHCEGEGIPDQLEAEEANKEGG
TAKEAKDDHHMEFCRVCKDGGELLCCDLCPLAYHTHCLNPPLRGVPDGEWRCPRCSVEPL
KGKVAKIMHWRFVEIPAEESAEEEASPATVPIAPPKRKPVVHKLREFFVKWHDMSYWHCS
WITELQLEVHHPSLYRNYCRKNDMDEPPPLDDGSSYGEGEVTAATGMKRKARRRYDRSDV
NLEEKYYRYGIRPEWLCIHRIINHKPLRSGGGNLYLVKWRDLPYDQCSWEAEDGGPDFQI
SDMKKAIDDYWDLRAAAEYVASSGKSGSKGGNNLRSKGRGKGGSSKRSESELEEQTSTST
TTTPSTRRYSPPPDKPTVDLKRKLDRQPPYIDATGMEMHPYQLEGINWLRYSWAHRTDTI
LADEMGLGKTIQTIAFLYSLFKEGHCRGPFLVSAPLSTIINWEREFEVWAPDFYVVTYIG
DKESRAVIREHELSFEEGAVRGGPKASRMRKDYPIKFHVLLTSYELNCIDAATLSSVEWQ
ILVVDEAHRLKNNQSKYFRVLNTYRINYKLLLTGTPLQNNLEELFHLLNFLSSANFHDMQ
GFLNEFADISKEDQVKKLHDLLGPHLLRRLKADVLKGIPAKSEFIVRVDLAPMQKKYYKY
ILTRNFEALNSKGAGGHQVSLVNIMMDLKKCCNHPYLFPGAAAEAPKLQNGAYEVKALTK
ACGKLILMQRMLRQLADQGHRVLVFSQMTKMLDILEDFLEGENYKYERIDGGITGSLRQE
AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQAN
KVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGMGSRASAAMSKQELDDILRFGTEEL
FKDEEGVTEGEGRQTEIHYDDKAVGELLDRSKEGIEQKEMWANEYLSSFKVASYQTKDAE
EEEEDGPETEILKQEAESADPAYWEKLLRHHYEQQQEDLARTLGKGKRLRKQVNYNDGGG
GGGSNLGGSQDDQNWQENVSDYNSDFSANSDDNEDDEYDDNREEKGFLRRKGRNEKDRPL
PPLLARVGGSIEVLGFNARQRKAFFNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFWAYV
SLFMRHLCEPGADHAETFADGVPREGISRQHVLTRIGVMSLIRKKVTEFEHTNGHVSILN
AILGLDGGSGEGGLNGGEGLSTNGSGSAAEEGADQSSSGPSSSATPTPQIKKEEEENDDD
DGETNADDLSSKAKESPVVAKEDEASSKSGGKDSKEKEEKDNKENLTNSEANNLENGGGV
SSKQQQLLAAISSEQKKVGKFLFNIADGGFTELHSLWANEEKAAVPNREMEIWHRRHDYW
LLAGIIKHGYGRWQDIQNDPIFSIINEPFKMDAGKGNFLEIKNKFLARRFKLLEQALVIE
EQLRRAAYLNLTQDLNHPVMALNSRFSELECLAESHRELAKQGESLLASKPVNAVLHKVL
NQLEELLSDMKSDASRLPAALVRIPSVSQRLQMSERVILSRLTTQPQPQPFNVAAGGGNI
HGGGVGGSQAAGLTAFSNLAAAAAAAAAAAAAGKL
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaggacgacgacaccgactcggagccggaagcggaagcgatggacaccagt
tcaccagcggcaacggcgaccagacatcgaaacgattccgaagactttgagggtcaacaa
aacaacaacaggaacagtggccacaaccaggaagaggaggaggaggacaccgacaccgag
gcgccagcagcagcagcagccgccgcagacgacggcaacgccactgagacggagatgaac
gccgaggaggaacaggagcaactactgctccaagaaaagcagtcctcctcttcgaaaaag
ctgaaaaaacgaaagcttcgcgactcatcggaatcctcatcggcagtggcagcctccgcc
gcaggcaaacagcgcaaatcaaagaaaaagaagcgcaagaaggctgccgccgagtacgat
tacgatgacgatgacgacgactttgacgacctcggggacgactttgaggaggaggtcccg
ggcgcctacggctccgccctctacaacccatcggcgccgatcatcgacccgaacacggga
cgggcgggcagcacgcccaagtcgcgtcgtctgaaggtgaagtcgcagaagacggtggcg
gagatctgcgcagagcacggcctggtcgacgtcgactacgagttcaccgacgtcgactac
cagaacctgaccagctacaaactcttctcgcagcacattcgcccgctgattgccaagtgc
aatccaaagattcagatgcccaagatgacgaccttcatgagcgccaagtggcgggagttt
accgccgccatgccctcgacgatggccgcggcagcggcggccgctgaagcagcagcagca
gcaaccgcggcagcaaactctgctgaagcatctgaatctgtcgctgctgccgatcttcag
tcgccctctgttttagaagaggagccaatggacaccagcctcaccgagccaacgggcaaa
aagtcgaaaaagggcagcagcaactcttcttttgctgcaacagctaccgacgtttccgcc
accgtcgcctcaacttcctctaccaacaacagcaactccaagggcaaatcagtgcccacg
ctgaagatcaagctgggcgcgctgagcaagcgaaagcgagccgcagcagcggccgccgcc
gccagctccgaagaggaagaggacagtccctccgagctgaacaagagcgacgtcgagttt
gaggcggctctggaagaggcgcagctgctcgcctcgccgccgccctcctcaaagtcgggc
ggaaagagcaagcacggcaaagggggcggcttcaaaaagggcagcagcctgagcagcaaa
aacaaaactggcgctcggaagaagacaaagacgacggacagcttccccgggagcagtgcc
agccgcgacgactccgactacgagaacggtggctacgagaccgaccaccaggactactgc
gaggtgtgtcagcagggcggcgagatcatcctctgcgacacctgcccgcgcgcctaccac
ctcgtctgcctggagccggagctggaggaggcgcccgagggcaagtggagctgcccgcac
tgcgagggcgagggcattcccgaccagctcgaggcggaggaggccaacaaggaggggggc
accgcgaaggaggccaaggacgaccaccacatggagttctgccgggtgtgcaaggacggc
ggcgagctcctgtgctgcgacctctgtcccctcgcctaccacacgcactgtctgaacccg
ccgctgcgaggcgtgcccgacggcgagtggcgctgtccgcggtgctcggtggagccgctg
aagggcaaggtggcgaagatcatgcactggcgatttgtggagattcccgcggaggagagc
gctgaagaggaggcaagtcctgcaactgtccccatcgcccctccgaagcgcaagccagtg
gtgcacaagctgcgcgagttcttcgtcaagtggcacgacatgagctactggcactgcagc
tggatcaccgagctgcagctggaggtgcaccacccctcgctgtaccgcaactactgccgc
aagaacgacatggacgagccgccaccgctggacgacggctccagctacggcgagggcgag
gtgaccgctgcgacgggcatgaagcgcaaagctcgccgccgctacgaccgctccgacgtc
aatctcgaggagaagtactaccgctacggcatccgccccgagtggctctgcatccaccgc
atcatcaaccacaagccgcttcgctccggcggcggcaacctctacctggtcaagtggcga
gacctcccctacgaccagtgcagctgggaggcggaggacggcggcccggactttcagatc
agcgacatgaagaaggccatcgacgactactgggacctgagggcggcggcggagtacgtc
gccagcagtggaaagagcggctcaaagggaggcaacaaccttcgaagcaagggccgcggc
aaaggtggcagttcaaagaggagcgagagcgagctggaggagcaaacatctacttcaact
accaccaccccctcaactcgtcggtacagtcccccgccggacaagcccaccgtcgacctg
aagagaaagctcgaccgccagccgccgtacattgacgccaccggcatggagatgcacccc
taccagctggagggcatcaactggctgcgctacagctgggcccaccgcactgacaccatc
ctcgccgacgagatgggcctcggcaaaacgatccagaccatcgccttcctctactcgctc
ttcaaggagggccactgccggggcccgttcctcgtctccgccccgctctccaccatcatc
aactgggagcgcgagtttgaggtatgggcgccggacttctacgtggtcacctacatcggc
gacaaggagagtcgggcggtgattcgcgagcacgagctcagctttgaggagggggcggtg
cgcggggggccaaaggcgagtcgcatgcgcaaggactaccccatcaaatttcacgtcctg
ctgaccagctacgagctgaactgcatcgacgccgccactctgagcagcgtcgagtggcag
attctggtggtggacgaggcgcaccggctgaagaacaaccagtccaagtactttcgcgtc
ctcaacacctaccgcatcaactacaagctgttgctgacgggcacgccgctgcagaacaac
ctcgaggagctctttcacctgctcaactttctcagctcggccaactttcatgacatgcag
ggcttcctcaacgagttcgctgacatcagcaaggaggaccaggtgaagaagcttcatgac
cttctcgggccccacctcctgcgccgcctgaaagcggacgtgctgaagggcattcccgca
aagagcgagttcatcgtccgcgtcgacctggcgcccatgcagaagaagtactacaaatac
attctgacgcgcaactttgaggcgctcaactcgaagggcgccggcggccaccaggtctcc
ctcgtcaacatcatgatggacctgaagaagtgctgcaaccacccgtacctctttccgggc
gcggcggcggaggcgcccaagctgcagaacggcgcctacgaggtgaaggcgctgacgaag
gcctgcggcaagctgattctcatgcagcgaatgctgcgccagctcgccgaccagggccac
cgcgtgctggtcttctcgcagatgaccaagatgctcgacattctggaggactttctcgag
ggggagaactacaagtacgagcgcatcgacggcggcatcaccggctccctccgccaggag
gccatcgaccgcttcaacgcgcccggcgcgcagcagttctgctttctcctctcgacgcga
gccggcggcctgggcatcaacctcgccaccgccgacaccgtcatcatctacgacagcgac
tggaatccgcacaatgacattcaggcattcagtcgggcgcaccgcatcggccaggcgaac
aaggtcatgatctaccgctttgtgacgagggcctccgtggaggagcgcatcacccaggtg
gcgaagaagaagatgatgctcacccacctggtggtccgcccgggcatgggcagccgggcg
agtgccgccatgtccaagcaggagctggacgacattctccgcttcggcacggaggagctc
ttcaaggacgaggagggcgtgacggagggcgagggcagacagacggagattcactacgac
gacaaggccgtcggcgagctgctggaccgctccaaggagggcatcgagcagaaggagatg
tgggccaatgagtacctgagcagcttcaaggtggccagctaccagacgaaggacgcagag
gaggaggaggaggacggcccggagacggagattctcaagcaggaggcggagagcgccgac
cccgcctactgggagaagctgctccgccaccactacgagcagcagcaggaggacctggcg
aggacgctcggaaagggaaagcgcctgagaaagcaggtcaactacaatgacggaggaggc
ggtggtggaagtaacctgggaggctcacaggacgaccagaactggcaagagaatgtctcc
gactacaattcggacttttcggcgaactcagacgataacgaagacgacgagtacgacgac
aatcgcgaggagaagggctttctccggcgcaagggccgcaatgaaaaggaccgcccgctg
ccgccactgctcgcccgcgtgggcggcagtattgaggtcttgggcttcaacgctcgccag
cgcaaggccttcttcaatgcgatcatgcgctacggaatgccgccgcaagacgccttcaac
agccagtggctggtgcgcgatctgcgcggcaagtcggagcgcaacttctgggcctacgtg
tcgctctttatgcgccacctctgcgagccgggggcggaccacgcggagaccttcgccgac
ggcgtcccccgggagggcatcagtcggcagcacgtgctgacgcgcatcggcgtcatgtcg
ctgatcaggaagaaggtgactgagtttgagcacaccaacggccatgtcagcattctcaac
gccatcctcggactggatggaggtagtggggaaggaggactcaacggcggagaaggactt
tccacaaacggctctggctcggcggcggaagagggcgctgaccagagctcatcggggccc
agctcatcggcaactccaacgcctcaaatcaaaaaggaggaggaggaaaatgatgatgac
gacggtgagacaaatgccgatgacttgagctcaaaagccaaggagtcgccggtagtggcc
aaggaggacgaggcctcctcaaagagcggcggcaaggacagcaaggagaaagaggaaaag
gacaacaaggagaacctgaccaacagcgaggcgaacaacctggaaaacggaggaggggtg
agcagcaaacagcagcagctgctggcggccatcagcagcgagcagaagaaggtaggcaag
tttctcttcaacattgccgatggcggcttcaccgagctgcactcgctgtgggcaaacgag
gagaaggcggcagtgccgaaccgggagatggagatctggcaccgccggcacgactactgg
ctcctggcgggcatcatcaagcacggctacggccgatggcaggacattcagaatgatccc
atctttagcattatcaatgagcccttcaagatggacgccggcaagggcaactttctggag
atcaagaacaagttcctcgcgcggcgcttcaagctgctggagcaggcgctggtgattgag
gagcagctgcggcgggccgcctacctcaacctgacgcaggatctcaaccacccggtgatg
gcgctgaacagccgcttcagcgagctggagtgcctcgcagagtcccaccgcgagctggcc
aagcagggcgagtcgctgctggccagcaagccggtcaacgccgtcctccacaaggtgctc
aaccagctggaggagctgctgtcagacatgaagtcggacgcgagtcgcctgcccgccgca
ctggtgcgcattccctccgtcagccagcggctgcagatgtcggaacgagtgattctctct
cgactgaccacacaacctcagccgcagcccttcaatgttgccgccggtggcggaaacatt
catggtggtggtgttggtggaagccaggccgccggactgacggcttttagcaacctggca
gcggcggcagcggctgcggccgcagcagctgctgctggcaagttgtaa
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integrated database retrieval system
