Rhagoletis zephyria (snowberry fruit fly): 108366815
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Entry
108366815 CDS
T08513
Name
(RefSeq) high mobility group protein DSP1-like
KO
K10802
high mobility group protein B1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03410
Base excision repair
rze04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108366815
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108366815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rze03036
]
108366815
03400 DNA repair and recombination proteins [BR:
rze03400
]
108366815
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rze04147
]
108366815
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
108366815
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108366815
MMR (mismatch excision repair)
Other MMR factors
108366815
Exosome [BR:
rze04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108366815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Peptidase_S15
DUF3807
CCSAP
Hamartin
V_ATPase_I
DUF3295
eIF3_subunit
FAM60A
MCM_bind
Motif
Other DBs
NCBI-GeneID:
108366815
NCBI-ProteinID:
XP_017476779
LinkDB
All DBs
Position
Unknown
AA seq
302 aa
AA seq
DB search
MSEHSAWGNRQATAAEAALWWPGAIAAAASQQQHQQQQPTIDQQTLQHYQQQLAAQQQQQ
AVQQQQLQQQQAHQVVVQQNQQQAHQNNANTTSGVGTQQLFTYKMASSFPNPATTMAQVV
ATSNAAGSTGYDYRLNMAQAAAAAAVPGSQWWYSAANSGQIDANTAAQLQQQQQQAQQQQ
QQQQQAQQQQQQQQAQQQQQQQQQAQQQQQQAAQQQQQQAQQAQQQQLQQQQQNAAASTM
VRGAKADAKPRGRMTAYAFFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKR
FH
NT seq
906 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcatagcgcgtggggcaaccgccaagcgaccgcagccgaggccgccctttgg
tggcctggcgcgatcgcggcggcagcgtcacaacaacaacaccaacaacaacaaccaacc
attgatcagcaaactcttcaacactatcagcagcagttggctgcgcagcaacaacagcag
gcagtacagcaacaacaattgcaacaacagcaggcccatcaagtggtcgtgcaacaaaat
caacagcaagcacatcaaaataatgccaacaccacttctggtgtaggcacccaacagtta
tttacctataaaatggctagtagcttcccaaatccagccacgaccatggcacaggtggtc
gctacctcaaatgcggccggttcgaccggctacgattatcgtcttaatatggcacaagca
gctgcagcggcagcggtacccggttcacagtggtggtattcggctgcgaattctggacag
atagatgccaacaccgctgcacagttgcaacagcaacaacaacaggcacagcaacagcaa
cagcagcaacaacaggcacagcagcagcaacagcaacaacaggcacagcaacagcagcaa
cagcaacaacaggcccaacagcaacaacagcaagcggcacaacagcaacagcagcaagct
caacaggcacagcaacaacaattgcagcaacagcaacagaatgccgcagcgagcacgatg
gttcgtggcgctaaagctgatgcgaaaccccgaggccgcatgacagcgtacgcattcttt
gtacaaacatgccgagaggagcacaagaagaagcatcccgatgagacagtgatctttgct
gaattctcccgaaagtgcgctgagcgatggaagacaatggtggacaaagagaagaagcgc
ttccat
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integrated database retrieval system
