Rhagoletis zephyria (snowberry fruit fly): 108367003
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Entry
108367003 CDS
T08513
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108367003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108367003
Enzymes [BR:
rze01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108367003
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108367003
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108367003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
108367003
NCBI-ProteinID:
XP_017477007
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MCYNVLCDKYATRQMYGYCPSWALSWEYRKKAILDEIRHYSADIISLQEIETDQFYAFFL
PELKADGYEGIFSPKSRAKTMSEMERKFVDGCAIFFRAAKFTLIKEHLIEFNQLAMANAE
GSDNMLNRVMPKDNIGLAALLKVKENAWDPMTEVTQISQPLLVCTAHIHWDPEFCDVKLI
QTMMLSNELKTIIDEASHSFRPGHKNDANSVQLLLCGDFNSLPDSGVIEFLGKGRVAMDH
QDFKDMGYKLCLQRLLSNDTSEFTHSFKLASAYSEDIMPHTNYTFDFKGIIDYIFYTKTG
MVPLGLLGPISNDWLRDNKVVGCPHPHIPSDHFPLLVELELMHTAGQQAPPNGLINRR
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgtgttacaatgttttgtgcgacaagtacgccacccgacaaatgtacggttactgcccg
tcgtgggccttgagttgggagtaccgaaaaaaggctatacttgacgaaatccgtcactat
tcggcggatataattagtctgcaagaaatcgagacagatcagttttatgctttctttttg
cctgagcttaaggccgacggttacgaaggtattttctcgccgaaatcacgtgccaagact
atgtcagagatggaacgtaaatttgtggacggttgcgctattttctttcgtgctgctaaa
ttcacattgattaaagaacatttaatcgaattcaatcaattggccatggccaatgctgaa
ggttcggataacatgttgaatcgtgtaatgccgaaggacaatatcggtttggcagcgctt
ctgaaagtgaaggagaatgcctgggatccgatgaccgaagtgacacaaatctcccaaccg
ctactcgtttgcacagcgcacattcactgggatcccgaattctgcgatgtgaaactaatc
cagacgatgatgttgagcaacgagcttaagacaatcatcgacgaggcaagtcacagcttt
agacccggtcacaaaaatgacgcgaatagcgtacaactgctgctgtgcggagatttcaat
tcgttgcccgattctggtgtaatcgaattccttggcaagggacgtgtagcaatggatcac
caggacttcaaggacatgggttataaattatgcctgcaacgcctactatcgaatgacacc
agcgagtttacgcattcctttaagttggcctccgcctacagcgaggacataatgccacac
acaaactacacgttcgactttaaaggcatcatcgattatatattttatacgaaaactggc
atggtgccgctcggtttgttaggtcccatctcgaatgattggttgcgcgataataaagtc
gttggctgtccgcatccgcatataccatcggatcatttcccgctgctggtcgaactggaa
ctgatgcatacggcgggacaacaagcgccgcccaatggcctgatcaaccgacggtag
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