Rhagoletis zephyria (snowberry fruit fly): 108367107
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Entry
108367107 CDS
T08513
Name
(RefSeq) DNA mismatch repair protein spellchecker 1 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108367107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rze03400
]
108367107
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108367107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Yuri_gagarin
Motif
Other DBs
NCBI-GeneID:
108367107
NCBI-ProteinID:
XP_017477150
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MEVINANRQEPQLNLDINAQRNFIKYYAKSEDKPPTTVRFFDRIDFYTVHGTDDCELIAK
LIYKSTAFVHKLLPDESDALSYVTLSKANFNMAVRELLLVRNFRVEVYVRPVGAAAASNN
WELEYRGSPGNLIQFEEILFGNREILVSNNLLSLQVRLVDGNQRRLGVAFVEQNDCQFHV
LEFIDNDFFTELEAMVVLLGPKECLLPAADGEYIAVRQLLERNNVGVTVPKRSAATPADK
NDLLQDLNRLIRFAKGQQEDALTLPEMQLTMAMEALRVAIKYLNLTNDASNLGHYEIKQL
NLKRFVHLDSAAVAALNILPKPGTNPNSPGYHWQSILGVLDHCRTPQGHRLLAQWIKQPL
RSIEILNDRHDIVQCLLESPGTLTTLHDDYLKRIPDVLMLTKRLLRQKANMQDLFRVYQV
VLRTPRIVNTLLSLEHATVKNVLCDAMKSYLEDLSGFKQLVEQVVDFEAIEAGDYLVKAS
FDEQLQDMKNHMSRVLSKMERLQQKAADDLNMEKSQVRLENVAKIGYHFRVTLKDDSELR
KNKNYKILDVVKGGVRFTNEKLTEYSEEYGTFCDQYEEQQKSVVEEIIKVAIGYAGPLSS
LNNELAQLDCLVSFAMAALAAPTPYMRPKMLKEGAGVLELKDLRHPCLELQEHVTFIANN
VAFEKDACNMFIITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCSEATITMVDSILGRVGA
SDNIVKGLSTFMVEMIETSGIVRTATENSLVIIDELGRGTSTYEGCGIAWSIAEHLAKVT
KCFTLFATHFHEITNLAKSVDTVKNCHMAAVANAENFTLLYQVCPGIMEKSFGIQVARLA
NFPEAVVHNAQRIYREFEDEYADKQSEADKELLDKIDAAVERLTTTGNDVDIDEAELSKL
VATFAKDIKQLDSEYFRTVLSVEGN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaataaacgcgaataggcaggagccgcaacttaacctcgatatcaacgcgcag
cgtaacttcataaaatactatgccaaatcagaggacaaacccccaacaactgtgcgattc
ttcgatcgcattgatttttacactgtgcatggcacagacgactgcgagttgattgctaaa
ctgatctacaaatctactgcatttgtccataaactcctacctgatgaatcggacgcgctc
agttatgttactttatcaaaagcgaactttaatatggctgttagagagctgcttttggtc
cgcaacttccgcgtggaagtttatgtccgcccggttggcgctgcagcagcaagcaataac
tgggaacttgaatatcgcggatcaccaggcaatttaatacagttcgaggaaattttgttt
ggaaatcgtgaaatacttgtgagcaacaacttactgtcgctccaggttcgtttggttgac
ggtaatcagcgtcgtttaggcgtggcctttgtggaacagaacgattgccaatttcatgtt
ttggagtttatcgacaacgatttcttcaccgagctcgaagcgatggtggtgctattaggc
ccaaaagaatgccttttgccagcagcagatggagagtacattgcagtaagacaactgctg
gaacgcaacaatgtaggcgtaactgtacccaaacgctctgcagcaacgcccgccgataag
aacgacttgctgcaggatcttaatcgcttgatacgttttgcgaagggacagcaggaagat
gctttaacattgccggagatgcaactcaccatggctatggaagctttgcgagttgctata
aaatacttaaatttaaccaacgacgccagcaatttagggcactatgaaattaagcaactt
aacctgaagcgctttgtacacttggattcagcggctgttgctgcgctcaacattctgccc
aaacctggcaccaatcctaactctcccggctaccactggcagagcattcttggcgtactc
gaccactgccgcactcctcaaggacatcgccttcttgcccaatggattaagcaaccgcta
cgtagcatcgaaattctaaacgatcggcatgacattgttcagtgcttattagaatcgcca
ggcactctaaccacactacacgatgactacttaaagcgcattcctgacgtgttaatgctg
acgaagcgtctgctacgtcagaaggctaacatgcaggacctctttcgtgtgtatcaagtt
gttttgcgtacacctcgtatagtcaacactttacttagccttgagcatgccactgtaaaa
aatgtgctctgtgatgcaatgaagagttatttagaggatttgtcgggttttaagcagtta
gttgagcaagtagtcgattttgaagctattgaagcaggcgactaccttgtgaaggcttct
tttgatgaacaattgcaagacatgaagaatcatatgtcgcgtgtgttatcgaaaatggag
cgcttacagcagaaggctgcagatgatttgaatatggaaaagtcgcaagtgcgtttggag
aatgtcgcaaaaattgggtaccattttcgcgttacgctgaaggatgattccgagttgcgt
aaaaataagaactataagattctcgatgtggtaaagggtggcgtacgcttcaccaacgaa
aaactaactgaatatagtgaggagtacggtactttctgtgatcagtatgaggagcagcaa
aaatcagtcgtggaggaaattataaaagtggctattggttatgcaggaccacttagttcc
ttgaacaatgagctagcgcaattagattgtttagtcagctttgcaatggcggcgttggcg
gcgcctactccatatatgcgtccgaaaatgttaaaagagggtgcgggtgtattagagctg
aaggacttacggcatccttgtctagaacttcaggagcatgttacgttcattgccaacaac
gtggctttcgagaaagatgcttgcaacatgttcataataactggaccaaatatgggcgga
aaaagtacttatatacgatcggtgggcactgctgtgctgatggctcacgtgggtgctttt
gtgccctgcagcgaggctacaataacgatggttgattccatattgggacgtgttggagcc
agtgacaacattgtgaaggggttgagtacattcatggtcgagatgatcgagacctcgggc
attgtgcgcacggcgaccgaaaattcgctggttattatagacgaactaggtcgcggcacg
tcgacgtatgagggctgcggtatagcttggtcaattgctgaacatttagccaaagtaaca
aagtgtttcacacttttcgccacacatttccacgaaatcacgaatctggctaaatccgta
gatacggtaaaaaattgtcacatggctgccgtcgcaaatgctgagaattttacgctccta
tatcaagtatgccctggtataatggaaaaaagttttggaatacaagtcgcacgtcttgct
aattttcctgaagctgtggtgcataatgcgcaacgcatttatagggagttcgaggatgaa
tatgctgataagcaaagtgaagcagataaggaattgctggacaaaatcgatgcagctgta
gagcgtttgacaactacgggcaatgatgttgatatcgatgaagcggaattgagtaaattg
gttgcaacatttgcaaaggatattaaacagttggacagcgaatatttccgcactgtactg
tcagttgaagggaattag
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