Rhagoletis zephyria (snowberry fruit fly): 108367584
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Entry
108367584 CDS
T08513
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108367584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108367584
03019 Messenger RNA biogenesis [BR:
rze03019
]
108367584
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108367584
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108367584
U7-dependent histone pre-mRNA processing factors
108367584
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Internalin_N
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
108367584
NCBI-ProteinID:
XP_017477727
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSQRIDDRVPAEESDLLQIKPLGAGQEVGRSCIILDFKGKKIMLDCGIHPGLSGMDALPY
VDLIEADEVDLLFISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISN
ISTEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFLIEIAGVKIL
YTGDFSRQEDRHLMAAEIPPIKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGR
CLIPVFALGRAQELLLILDEYWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDKIRR
QIAVNNPFVFRHISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFENWCTDPKNGVIIA
GYCVEGTLAKSILSEPEEITTLAGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPQHVV
LVHGEQNEMSRLKMALQREYEADTSTNIKFYNPRNTHSVELYFRGEKTAKVMGNLAATKP
EVGKKLSGVLVKRDFKYHLLAASDLSKYTDMSMSVVTQRQSIPWNSPLGTLKLLLDRIGG
AGTTEVIEEEKRIRAFKCIDLLVEGKIIIMEWQATPVNDMFADSVLACIMQTEMGGTSIK
GATALSKSDRTHFKECLVETLQDTFGEHSVPKMFKGDVLPVTVAGKRAEVNLETLQVHCP
EDDSLRQIVNTAVQKLHQALVTLP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacgtatcgatgatagagtccccgcggaagagagtgatctccttcaaattaag
ccgctaggcgcgggccaggaagttgggagatcttgtataatattagacttcaaaggcaaa
aaaattatgctcgattgtggtatccatcctggtttgtccggtatggacgcattaccttac
gtagatttaatagaagccgatgaggtggatctcctctttatatcacatttccacttggac
cactgtggagctttaccatggtttctcatgaaaacgagttttcggggccgatgctttatg
acgcacgccacaaaagctatctatcgatggatgttatcagattacataaaaattagtaat
atttccaccgaacaaatgctctatactgaagccgatctggaagcgtcgatggagaaaata
gagactataaattttcacgaagaaagagatgttatgggtgttcgcttttgcgcttataat
gcgggtcatgtgcttggcgcagccatgtttctaattgaaatcgcaggagttaaaatactg
tataccggcgacttttctcgacaagaagatcgtcatttgatggccgcagaaataccgccc
attaagcctgacgttctcatcactgaatccacttatggtactcatatacatgaaaaacga
gaggatcgagaaaaccgttttacctctttggtgcagaagattgtccaacaaggtggacgt
tgtttgatcccagtttttgccttaggccgcgcccaagagttgctacttatactggatgaa
tattggtcacagaatcctgagctgcacgaaatacccatttactatgcttcatctctggct
aagaaatgtatggccgtttatcagacatacattaatgcaatgaatgataaaattcgacgt
caaatcgctgtgaataatccgtttgtattccgacatatttccaatctaaaaggcatcgac
catttcgacgacattggtccttgcgttataatggcatcgccaggaatgatgcaaagcggt
ttatcgcgagaactatttgaaaactggtgcacagatcctaaaaatggagttattattgct
gggtattgcgtcgaaggtaccttggcgaaatccatactttcagaaccagaagaaattacg
acactggctggacaaaaattgccgctgaatatgtcagtggactacatttctttctctgca
catactgattaccaacaaacaagcgaattcatccgtcttctaaaacctcaacatgtggtg
ttagttcatggagaacagaacgaaatgtctcgtctaaaaatggccctgcagcgagaatat
gaggcagatacctctacaaatataaaattttataatccacgtaacacacattctgttgaa
ctctatttccgtggtgaaaaaaccgccaaagtgatgggcaatttggcggctaccaaacca
gaggttggcaaaaaattgtccggagttttggtgaaacgcgactttaagtaccatctttta
gcagcgtctgatttatcaaagtacacggacatgagcatgtctgtcgtaacacagcgacag
tccattccctggaatagtcctttaggtactttaaagttgttattggacagaattggtggt
gctggtacaacagaagttattgaggaagagaaacgtattcgtgcattcaagtgcatcgac
ctcttggtggagggaaaaatcattattatggagtggcaggcaacacctgtgaatgacatg
tttgctgattcagttctagcatgcattatgcaaactgaaatggggggcaccagtattaaa
ggtgccactgccctttcaaaatcagatcgcacccatttcaaagaatgtttggtagaaacg
cttcaagacacattcggggaacactctgtaccaaaaatgttcaaaggtgatgttttgccc
gttactgtggcgggaaagcgagcggaagtgaatttggaaacattacaagtgcattgtccg
gaagatgacagcttacgacaaatagttaatacagcagtacaaaaattgcaccaggcttta
gtcacacttccttga
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