Rhagoletis zephyria (snowberry fruit fly): 108367638
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Entry
108367638 CDS
T08513
Name
(RefSeq) THO complex subunit 6
KO
K13175
THO complex subunit 6
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108367638
09122 Translation
03013 Nucleocytoplasmic transport
108367638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108367638
03041 Spliceosome [BR:
rze03041
]
108367638
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108367638
Spliceosome [BR:
rze03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108367638
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
NBCH_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_ACSF4
EIF3I
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_WDR41
VID27
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
108367638
NCBI-ProteinID:
XP_017477799
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MKDLKLKAMYNNVISQAISESGRFLFAGNRFGDIFVQDLHDLEKSDAPRSKVRVFPQPAQ
TEINSLCCHRDFLIVGAIGIIYGLSWNEEKRELSTIRKWEVKIPLDVDAVEVPDVNFLWL
RAETDTLYAGCGDNVIYQINLENGSIVRDYRGHTDYIHGVAGSEKGRIFSASEDGTVRFW
SEQQKEAIGKLAPSENAQLMRPEYGKWIGAVATNEDWLICGGGPKFSIWHLGTMECMRDF
TFPGKVHVCDFVEENLFVAGEHSHAQFYAMNGDIHANVPLEHTAAYSVVWQLEPIKFMSI
AGYSNKLHILNDFRFLDSKIELYGNTE
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacttaaaactaaaggccatgtacaacaacgtgatatcgcaagccatttcggag
tctggccgttttttgtttgccggcaatcgctttggcgatatttttgtccaagacctccat
gacctagaaaaaagtgatgctcctcggtccaaggtacgtgttttcccacagcctgcccaa
acggagattaacagcctttgttgccatcgtgatttccttatcgtgggtgccattggcatc
atatatggcctaagctggaacgaagaaaaacgggaactgagcactatccgcaaatgggag
gttaaaattccgctcgacgtagatgccgttgaggtacccgatgtaaattttctgtggcta
cgcgcagaaacagacacactatatgccggttgcggcgacaatgtaatttatcaaataaat
ttggaaaatggcagcattgtaagggactaccgtggtcacactgactatatacatggtgta
gcaggcagcgaaaaagggcgcatcttttccgcttccgaagatggaacggtacgattttgg
agtgaacaacagaaagaggcaatcggcaaattagcaccaagtgaaaatgctcaattaatg
cggccagagtatgggaaatggataggcgcagttgcgacaaatgaagattggttaatttgt
ggaggcggaccaaagttttccatatggcatttgggcacaatggaatgcatgcgcgatttc
acttttccaggtaaggtgcacgtttgtgatttcgtagaggaaaatctatttgtggctggt
gagcatagccatgcacagttttatgcgatgaatggtgatatacatgccaatgtaccattg
gaacacacagcagcctactcagtggtgtggcagctggagccaataaaattcatgtccatt
gcaggctacagcaacaaattgcatatattaaatgattttcgcttcttagatagtaaaatt
gaattatacggaaatacagagtaa
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integrated database retrieval system
