Rhagoletis zephyria (snowberry fruit fly): 108368009
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Entry
108368009 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108368009
03015 mRNA surveillance pathway
108368009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108368009
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108368009
mRNA cycle factors
P-body specific factors
108368009
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF7792
Motif
Other DBs
NCBI-GeneID:
108368009
NCBI-ProteinID:
XP_017478237
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MVIESSSNGNEGKSNKDSEEPLQAEPEADVDSVAANEEERQEREELNNFINELQSKIKAK
AQLRVENLNCEHPGDGFFAKLDSSLKRNTAFVKKLKQFTAAQLDALLKDMCALNLSKYIS
EICAALSEAKLKMTDVPAVVTLCSRLHQTYADFDTQFLEAWQKILSLKPGEKISNPSKLR
VDLRLFAELVSSGVISGKQGLQLLGSVLINVISQDKEDHSNFSIILSFCRHCGEEYAGLV
PRKMQNLAEKYGGVVIPKSDFLAPDRQQNLRGLLKDYFKNLCKHLLSEQQELLNMTKSIR
RTMESKGEISNDKKEKCELMQANFDKLLSSAQTLSDLLDEPLPELATESENCNPGTVIEN
MLEVATMGELDPWGDDETKSFYTDLPDLRQYLPNFSAPKIDLDQNEEPTEMTEEALDADI
DVEMDIDDPPSTASDPPNDKDAEIAAEPGSEESATPAPLPDKIANALMEAGRMGAGQVSH
SKQHFDQFLNNLNNCVNKELIDSAAIEFLLNFNTKNNRKKLTKSIFTVQRTRLDLLPFLS
RFVAIVNLCNTDVATDLSEMLRKEFKWHIRKKNQLNIESKIKIVRFIGEMVKFGLCKKFD
ALSCLKMLLRDFQHHQIEMACAFIEVAGVYLYNCRDSRLLTNVFLDQMMRXKTATALDSR
HAAQVESVYYLVKPPDTXKQDAVVRPVIHEYIRHLIFEELCKQNVDRCIKMMRRINWEDP
TVSSYAIKCLSKAYLLRFPLIRCLADLVSGLSSYQERAVTMVIDNVFEDIRAGLEIHSPK
LAQRRIAMAKYLGEPYNYKLXESTNILNTLYSIISLGVSTEDGVYSELDPPDSLFRLKLN
CVLLDTCGQYFTSSMSRKKLDLLLXVFFQHYYWYKKSHPVFSKVENTSDLFPILVDHMYR
DCLANVRPKLKLYKSLEQAKEAIEKLKEELYPQLKEGMQLQTEGESSLEPIREDSEFDDM
LSDDSSSEREPRARAPDVGGDDDPNTEDANNANELANTTDWTENEFMLEDCESRVPEKSK
EDMEFEQMFEKMAADSYQERIKETVKPNTKDIPVPMMARTSKKSYEQITTPSGNQSCSEK
EAAKSTTANAAGGAVPFVLMVRGGKGGKQQFKQFVAPSDSQLAINLKLQEEKTREEKEKV
KRLTLNITERIEEEDYQESLMQSQRSLSQNHYQRPSKPKFRHQKGAPDADLIFN
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggtgattgaaagttcatctaatggcaatgagggcaaatccaataaagattcggaggag
ccgctacaagcggagccagaagctgacgtcgactcggtggccgcgaatgaagaggagcgc
caagaacgcgaggaacttaataactttataaatgaattacaatcaaaaattaaagctaaa
gcgcaactgcgcgttgaaaatcttaactgtgaacatcctggtgatggtttctttgccaaa
ctagattccagcttgaagcgcaacacggcatttgtcaagaagttgaagcagttcaccgct
gctcaattggatgcattgctgaaagacatgtgcgccctaaatttgagtaaatacatctca
gaaatttgtgcggcactttcggaggcaaagttaaaaatgaccgatgtaccggcggtggta
acactctgttcccgcttacaccaaacttacgctgacttcgacacgcaatttcttgaagca
tggcagaaaattctttctttgaaaccaggtgaaaagatctcaaatccaagtaaattacgt
gtggacttgcgcttatttgctgagcttgttagctcgggagtgatcagtggtaaacagggg
ctgcaattacttggatccgtgctcatcaatgtgatctcgcaggataaagaagatcatagt
aacttctcaatcatattgtctttctgtcgacattgcggcgaggagtatgctgggctcgtg
ccacgcaagatgcaaaatttggcagaaaagtatggtggagtggtgattcctaagtccgat
ttcctagcgcccgacagacagcaaaatttgcgtggtttattaaaggattatttcaaaaat
ttatgtaagcacttgctttccgaacagcaggagctgttaaatatgaccaagagcatacgg
cgaactatggaatcaaaaggtgaaatctcgaatgataaaaaagaaaaatgcgagctaatg
caagcaaatttcgacaaactactgtcgtcagcacaaacgctctccgatctactcgatgaa
cctttaccggagcttgcaacagaatcagaaaattgcaatccgggtacggttatcgaaaat
atgctcgaagttgccacaatgggagaactagatccatggggcgatgatgaaaccaaaagt
ttttacacagacctgccagatttacggcaatatcttccgaatttttctgctccaaaaatc
gatttggatcaaaatgaagagcccacggagatgacggaggaagcacttgatgcggatatt
gatgtggagatggatatagatgaccctccctcaacagcatcagatccgccgaatgacaaa
gacgcggagatcgcagccgaaccaggtagtgaagagtcggcgacgccagcaccgttacca
gacaaaatcgcaaacgccctaatggaagctgggcgcatgggtgcagggcaggtgtcccac
agcaagcaacatttcgatcaatttttgaacaatttaaataattgtgtcaataaagaactt
attgactcggcagcaattgagttcctgctgaatttcaatacaaaaaataaccgtaaaaaa
ctcacgaaatcaattttcacagtgcagagaacacgcttagatttgctgccgttcctatca
cgttttgtcgctattgtcaatctttgcaatacggacgttgccaccgacttgtcggaaatg
ctgcgaaaagaatttaaatggcacatacgcaaaaagaatcagcttaatattgaatcgaaa
atcaaaattgtacgcttcattggcgagatggttaaatttggtctctgcaaaaagtttgac
gcgctcagttgtttaaagatgttgctacgtgacttccagcatcatcaaattgaaatggct
tgcgcatttattgaagtcgcaggcgtatatctctacaactgtcgtgactcccgcttgctt
acgaatgtcttcctcgatcaaatgatgcgcntaaaaaccgctaccgctttggattcacgc
catgccgcgcaagtagaaagtgtttattatctggtcaaacccccagacaccnataaacaa
gatgctgtggtacgtccggtaatacatgagtacatacgtcatctgattttcgaagagtta
tgcaaacaaaatgtagatcgttgtataaaaatgatgagacgtatcaattgggaggatcca
acagtgagcagctatgccataaagtgtctgtccaaggcatatttgctacgttttccgctc
atacgctgtcttgctgatttggtgtcaggtttgagctcataccaagagcgggctgtaacc
atggttattgataatgttttcgaggatatacgcgctggtttggaaatacactcgccaaaa
ttagcacaacgccgcatagcaatggccaagtatctcggtgaaccgtacaactacaagtta
ngtgagtcgaccaatattttgaatacactttactcgataatctcactgggcgtgtcaacg
gaagacggtgtatactcagaattagatccgccagacagtttgtttcgtttgaaattgaat
tgtgttttgttggatacgtgtggacagtattttactagttcaatgagtcgcaagaaactt
gatctacttctctaggtgttttttcaacactattattggtataaaaaatcacatccggtg
tttagtaaagtggaaaatacttcggatcttttccctatactggtggatcatatgtatcgc
gattgcttggctaatgtacgaccgaaattgaagctgtataaaagtctcgaacaagccaag
gaagcgattgagaaactaaaggaagaattatatccgcaattaaaagaaggcatgcaattg
caaactgaaggtgagagcagtctcgaacctatacgcgaagacagtgaatttgatgatatg
ctcagtgacgattcctcttctgaacgtgaaccacgcgcccgtgcacccgacgttggagga
gatgatgatcccaataccgaggatgccaacaatgccaatgagctggccaacacaactgac
tggactgaaaatgaattcatgctcgaagattgtgaaagtcgtgtgccagaaaaatcgaaa
gaggatatggagttcgaacaaatgtttgaaaaaatggcagcagacagttatcaggagcgc
atcaaagaaactgttaaaccaaatacgaaagacataccggtaccaatgatggctagaacg
agtaagaaatcctatgagcaaattactactccgagtggcaatcagtcgtgtagtgaaaaa
gaggcagcaaaaagtaccactgccaatgctgctggcggtgcagtgccatttgtgctgatg
gtacgtggtggaaagggaggcaaacaacaatttaaacaatttgtggccccatccgattcg
caattggccattaacctgaagctgcaggaagagaagacacgagaagagaaggaaaaggta
aagcgtttaacgctaaacataaccgaacgtatagaagaagaggactatcaggaatctttg
atgcaatcacaacgcagcttgtcgcagaaccattatcaacgcccgagcaagccaaaattc
cgacatcaaaagggtgcaccagatgcagatttgattttcaattaa
DBGET
integrated database retrieval system
