Rhagoletis zephyria (snowberry fruit fly): 108368170
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Entry
108368170 CDS
T08513
Name
(RefSeq) probable ATP-dependent RNA helicase DDX55 homolog
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rze03009
]
108368170
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108368170
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
Helicases
108368170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108368170
NCBI-ProteinID:
XP_017478445
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MSRRAKFERRWLLGNPQARGQEKRTKTNTAKLLKYQFVVFISNKLVFDENCGALKMARRK
WTELEKVSLSSPVLEALASFGFEKTTPVQSATIPLLLERKDVSVEAVTGSGKTLAFLVPM
LEMLQRRHTDMPWNPKEIGGLIISPTRELAYQISEVLAKFLEQEDLQYLRQKLLVGGSNL
EEDISALKKESPNILVCTPGRLDDIFERKGDLNLASRVKSLEFLVLDEADRLLDLGFKAT
INNILGYLPRQRRTGLFSATQTTEVTALIRAGLRNPVRVSVKEKSSISTPAKLQNFYKIV
EPEEKFLAVLNFLRSPLSAHGKVMVFFPTCACVEYWTTVIPQFLPERCILGIHGKMKNKR
KNIVERFRQVTDAVLLCTDVLARGLDVPEIDWVVQWDPPASASSFVHRVGRTARQGNEGN
ALIYLLPSEDAYITFLKINQKVDLSELLGSDHNRDDLKKILQTLHNLQLKDKDIFDKGTR
ALVSHIQAYTKHECNAILRLKDLDLGKVATAYGLLQMPRMPELKNCEAINFIGPTFEIDI
TKLSYKNPQKEQQRQEKLKVYEECGVWPRKKKFNKRTESWEQTKKAKIDTKTKKELRKAK
KQRKNDSGAQNDATSARGKKRKPQYTKQDLEELANDIRLFKKLKRNKITEEDFDKEMGIE
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaagggctaaatttgaacgacgatggctacttggcaaccctcaagcacgtggc
caagaaaagcgaaccaaaacaaatactgcaaaattgctaaaatatcaatttgtcgtgttt
atctcgaataaattagtatttgacgaaaattgtggtgctttaaaaatggctcgtagaaaa
tggaccgaattagaaaaggtctcgctgtcctcacctgtcctagaagccttagctagtttt
ggattcgagaagacaacacctgtccaaagcgccacgatacccctgctgctagagcgaaaa
gatgttagtgttgaagcggtaactggctctgggaaaacattggcctttttggtgcccatg
ctagagatgttgcaacgacgacacactgatatgccatggaatcccaaagaaataggcggt
ctaattatctcgcccacacgtgaattagcatatcagatatctgaagttctagctaaattt
ttggagcaggaggatttacaatacttgcgtcaaaaattgttagtgggaggcagcaattta
gaagaagatattagcgcattaaaaaaagaaagccctaacatattggtttgtactcctggt
cgtttagacgacatattcgaaagaaaaggcgatctcaaccttgctagcagagtgaagagt
ttggaatttcttgtgttggatgaagctgatcgactacttgatttggggttcaaggcaaca
ataaacaatattcttggttatttacctagacaacgtcgcactggcttgttttccgctacg
caaacaactgaagtaacggctcttattcgtgcaggccttcgaaaccctgtgagagtgtca
gttaaagaaaagtctagtattagtactccggcaaaattacaaaatttttataaaatagta
gaacctgaggaaaaatttttagctgtattaaattttctacgttcaccactgtctgcccac
ggaaaggtaatggtattctttcccacctgtgcatgtgtggaatactggacgacagtaata
ccacagtttttgcccgaacgctgcatattaggcattcatggtaaaatgaagaacaagcgt
aaaaatattgtagaacggttcaggcaagtaacagacgcagtgttactttgtactgatgtt
ctggcacgcggtctggatgtacctgaaattgactgggtagtgcagtgggatccaccagca
agcgcaagtagttttgtacatcgtgtggggcgtacagcacgtcaaggtaatgagggaaat
gctttgatatatcttctgccaagcgaagatgcctatattacttttctaaagataaaccaa
aaagtcgatctaagtgaactactgggttctgatcacaatcgtgatgatttaaaaaaaata
ctgcaaacactgcataatcttcagctgaaggataaagatatttttgataaaggaactcgc
gcactcgtgtcgcacatacaggcatatacaaagcatgaatgcaatgcaattttacgttta
aaagatttggacctcgggaaagtggctacagcctatggtctgctacaaatgccacgcatg
cctgaactaaagaactgtgaagcaataaatttcattggaccaacatttgagatagatata
actaaattaagctataagaatccacaaaaggagcaacaacgccaagaaaagctcaaagtc
tatgaagaatgtggtgtttggccgcgaaagaagaaattcaacaagcgtacagaatcatgg
gaacaaacaaaaaaagctaaaatagatactaaaacaaaaaaagaattaagaaaggcgaaa
aaacagcggaaaaacgatagtggggcgcaaaacgatgcaacaagtgctagaggaaagaaa
aggaagccacaatacacaaaacaagatctggaggagctggctaacgacataagattattc
aagaagttaaaaagaaataaaattacagaggaagattttgataaagaaatgggtattgag
gattaa
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