Rhagoletis zephyria (snowberry fruit fly): 108368206
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Entry
108368206 CDS
T08513
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108368206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108368206
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108368206
Complex C
U5 SnRNP specific factors
108368206
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_16
TPR_2
HAT_Syf1_CNRKL1_C
TPR_8
FAT
TPR_1
TPR_9
ARM_TT21_N
NatA_aux_su
ARM_TT21_5th
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
108368206
NCBI-ProteinID:
XP_017478490
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MANITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPP
AAKRKKKEEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDKDDEEADQIYDSIDKRMDEKR
KEYRDRRMREDLERYRQERPKIQQQFSDLKRSLANVTAEEWSTIPEVGDSRNRKQRNPRA
EKFTPLPDSVLARNLGGEATSTIDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTL
MNVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPP
AWIASARLEEVTGKVQMARNLIMRGCEINPQSEDLWLEAARLQPPDTAKAVIAQAARHIP
TSVRIWIKAADLETETKAKRRVFRKALEHIPNSVRLWKAAVELENPDDARILLSRAVECC
NTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEANGNIHMVEKIIDRS
LASLTANGVEINREQWFQEAIEAEKSGAVHCCQAIVKAVIGVGVEEEDRKQTWIDDAEFC
AKENAFECARAVYAYALQVFPSKKSIWLRAAYFEKSHGTRESLEALLQRAVAHCPKSEVL
WLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENAEYERARRLLAKARS
SAPTPRVMMKSARLEWALDNLGDALRLLDEAVKVFPDFPKLWMMKGQIEEQKNHLDEAAE
TYTQGIKKCPTSIPLWALSAKLEERKGTLTKARSILERGRLRNPKTAMLWLEAIRIELRA
GLKEIASTMMARALQECPNSGELWAEAIHMESKPQRKTKSVDALKKCEHDPHVLLAVSKL
LWSEHKFTKCRDWFNRTVKIDPDLGDAWAYFYKFEMLHGTEEQQKEVLERCVTAEPKHGE
AWCRVSKHIKNWCFKTPEILNGVVKQLSIPV
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatataactgcagcagttattgctaatcggaacaaaaagcattttctgggcgta
cccgcgccacttggttatgttgctggtgttggtaggggcgccaccggtttcactacgcgt
tcagatatcggtcctgcccgcgatgccaacgatgtgtctgatgatcgccatgcaccaccc
gctgcaaaacgcaagaagaaagaagaagaggaggaggaagatgaggatttgaacgactct
aactacgatgaatttagcggctacagtggctcacttttctccaaagatccatacgacaaa
gatgatgaagaggctgatcaaatttacgattccatagacaaacgtatggacgagaaacgt
aaggagtaccgagatcgtcgtatgcgtgaagatttagagcgctatcgtcaggagaggcca
aaaattcaacaacaattctccgatcttaaacgctcgctggccaacgtcaccgccgaggaa
tggtcaactatacctgaggtaggtgacagtcgcaatcgcaagcagcgtaatccacgtgca
gagaaattcacaccgcttcctgacagcgtgctggcgcgtaatctcggtggtgaagctact
tcaacaatcgatccttcatctgggcttgcctcaatggtacctggtgtagccacgcctggc
atgcttacaccaaccggcgatttggatttacgcaagattggccaggcgcgtaacacgctc
atgaatgttaagctttcgcaggtttctgactctgtaaccggtcaaactgttgttgatccg
aagggctatctgactgacctgcaaagcatgatacccacttacggcggtgacataaatgat
atcaagaaagcacgcctcttattgaaaagtgttcgtgaaacgaaccctaaccatccacct
gcttggattgcatcagcacgtttggaagaagtaactggcaaagtgcaaatggcacgtaat
cttataatgcgtggttgtgagatcaatccccaatcggaggacttgtggttagaagcagcg
cgtttgcagccgccagacacagccaaggctgtgattgctcaggcagcgcgtcacattcct
acttcggtgcgtatttggataaaggctgctgatttggaaacggagacaaaagcaaaacgg
cgcgtttttcgcaaagcgctcgaacacattcccaactcggtgcggctttggaaggctgct
gttgaattagagaatcctgatgatgcgcgtattttactctcgcgtgctgtcgagtgctgc
aacactagcgtggagttgtggctggcgttggcacgtctagaaacctatgaaaatgcacgt
aaggtactgaataaggcgcgtgagaatataccaacggatagacaaatttggacaactgct
gcaaagctggaagaagcaaatggaaatatacacatggtggagaaaattatcgatcgttca
ttggcatcacttaccgcaaatggtgtggagatcaaccgcgaacaatggttccaggaggcc
attgaagcggagaaatctggcgcggtgcactgctgccaggccatagtaaaagctgtaatt
ggtgtaggcgtggaggaggaggatcgcaaacaaacatggattgatgacgctgagttctgc
gcaaaggagaatgcattcgagtgcgcacgtgctgtctatgcgtacgcgctgcaggtgttc
ccctcaaagaagagtatttggttgcgtgcagcttacttcgagaaaagtcatggtacgcgc
gaatctctggaggcgctgcttcaacgcgccgtagcacattgtcctaaatctgaggtgctc
tggctaatgggcgccaaatccaagtggatggctggtgatgttcccgctgcgcgtggcata
ctctcgttagcttttcaagcgaatcctaactctgaagacatttggttggctgctgtcaaa
ctggagtcagagaatgcagaatacgagcgtgcacgccgtttgctagctaaagcacgttca
tcggcgcctacaccacgtgttatgatgaaatctgcacgcctagaatgggcgctcgacaat
ttgggagatgctttgcgcctgcttgatgaggctgtaaaggtattccctgactttcctaaa
ctatggatgatgaaaggacaaatcgaagaacaaaaaaatcatttggatgaagcggccgag
acctacactcaaggtattaaaaagtgtccaacatctataccgttgtgggcgctttctgct
aagcttgaagaacgcaagggcacacttactaaggcgcgttcaatactagagcgtggacgc
ttacggaatccgaagactgcaatgctatggttggaagcgatacgaatagaattgcgcgcc
ggcttaaaagaaatcgccagcacaatgatggcgcgtgcattgcaggagtgccctaattca
ggtgagctatgggctgaggcgatccacatggaatcgaagccgcagcgcaaaacgaagtca
gttgatgcgctcaaaaaatgtgaacacgatccccatgtgctgctggctgtttcaaagttg
ctctggtcagaacataaattcactaaatgtcgcgactggttcaatcgtacggttaaaatc
gatcccgatctaggcgatgcatgggcatatttttacaaattcgagatgctgcatggtacg
gaagagcaacagaaggaagtcttagagcgttgtgtaacagctgagccgaagcatggcgag
gcctggtgcagagtgagcaaacatattaaaaattggtgcttcaagacaccagaaatattg
aatggcgtggttaaacaattatcaataccagtataa
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