Rhagoletis zephyria (snowberry fruit fly): 108368770
Help
Entry
108368770 CDS
T08513
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rze03016
]
108368770
Enzymes [BR:
rze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108368770
Transfer RNA biogenesis [BR:
rze03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108368770
Prokaryotic type
tRNA splicing ligases
108368770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
108368770
NCBI-ProteinID:
XP_017479171
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRPYNEELKYLEKISDCCWRIKKEFQPNMKVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SQEGQDYLKSMAAAANFAWVNRSSMTFLTRQSFAKMFGTTPDDLDMHVIYDVSHNIAKVE
NHIVNGKEKQLLVHRKGSTRAFPPHHPLIPVDFQLTGQPVLVGGTMGTCSYVLTGTEKGM
HETFGSTCHGAGRALSRAKSRRNLDYKDVLEKLEEMGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHTAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcgcccatataatgaggagttaaaatatcttgaaaagatcagcgactgctgt
tggcggataaaaaaagaatttcaaccgaatatgaaagtggagggctgtttctatgtaaat
agtcggctagaacggctaatgttggaggagcttaaaaactcttgtagaccaggtgctgtt
ggtggttttttaccgggtgtgaaacaaatagcaaacgtcgccgcattgccaggaattgtg
ggacgttctataggactacctgatattcattctggttatggatttgctataggaaatatg
gctgctttcgacatgaatgaccctacatcgattgtaagcccgggaggagttggatttgat
attaactgcggtgttcgcttactacggacaaatcttttcgaaaaagatgttcaaccagtt
aaagaacaattggcgcaatcccttttcgatcacattccagttggtgttggttctaaaggc
ataattcctatgaatgctcatgatatggaggaagctcttgaaatgggtatggattggtct
cttcgtgaaggttatgtctgggcagaagacaaagagcattgtgaagaatatggccgcatg
ttaaacgctgatccttccaaagtaagtttacgcgcaaaaaaacgtggcttgccgcagttg
ggaactttaggtgcaggaaaccattacgcagagatccagattgttgatgaaatttacgat
aaatggagtgctagtaaaatgggtattgaggaaaaaggacaggtatgcgttatgatacac
tcgggcagtcgaggatttggtcatcaagtagccacggacgctttagtgcagatggaaaag
gccatgaaacgtgataagatagaaacaaacgatcgacagttagcttgtgctcggataaac
tcacaagaaggtcaagattatttaaaatccatggccgccgctgccaatttcgcttgggtt
aatcgtagttcaatgactttcctcacgcgtcaatctttcgccaaaatgtttggcaccaca
ccggacgaccttgatatgcacgtgatatacgatgtttctcataatattgctaaagtagaa
aatcacattgtcaatggtaaagaaaagcaattgctcgtacatagaaagggatcaacgcgc
gcgtttccgcctcatcatcccttaattccagtggactttcaactcaccggccaaccagta
ctggtgggcggaacaatgggcacatgcagctatgtgctaactggaactgagaaaggaatg
catgaaacgtttggatctacttgccacggggcgggtcgcgcattgtcacgtgctaaatca
cgacggaatttagactataaagatgttcttgagaagttagaagaaatgggaattgctata
cgtgtagcatctccgaaacttgtaatggaagaggctccagaatcttataaagatgtaacc
gatgtcgttgatacatgccacacagccggtattagcaaaaaatgtataaagttacgcccg
attgcagtgataaaaggttaa
DBGET
integrated database retrieval system
