Rhagoletis zephyria (snowberry fruit fly): 108369082
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Entry
108369082 CDS
T08513
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04120
Ubiquitin mediated proteolysis
rze04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108369082
04120 Ubiquitin mediated proteolysis
108369082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rze04121
]
108369082
Enzymes [BR:
rze01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108369082
Ubiquitin system [BR:
rze04121
]
Ubiquitin ligases (E3)
U-box type E3
108369082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF4218
Motif
Other DBs
NCBI-GeneID:
108369082
NCBI-ProteinID:
XP_017479552
LinkDB
All DBs
Position
Unknown
AA seq
1303 aa
AA seq
DB search
MSSAEEQNNKMNELTPEEIRARRLRTLAVANTPKVNTPSSTTTTTIESSSSSTTIPTTPV
SADDNEKGLAPRCPNYATKDSRLLRTQLTAEASNSSENMLPPSESTKMDVDVEMNSLNTT
PTQPMDIAKCPLVLTAASSTSSVFTPPTECAIKAELGNYSNEAADSSFVECMETTEITNT
ISERKQPEQSLDERIEGMISKIFNAAWNEHSVGSMICPRTANFLEQYPHMRFDFETIIHD
LLLECVLKLYKEEHDSTEGASGGSVAAATNEADIPSTSASSSAIAVSSSDNNKATSSKST
AASALATSTSTTSAASSANPTYSTPKKIKSDDTEVQEILANAAPGSAGGTRPSIFFSENA
MSGGGSSSTRDDEQPTSSQAATTSAAANLDCTTYPVPTSATMRGTVVKQDVVLYLVNCHR
LRQQYLTDNNVSSSNDPIEAATKIQSILQQVYDAVMRTTILVLTDRIYENSNYILDQSAL
LEMLYQGRIPDGFLYDLVATAYNQFEDFQQIFTQLLRGLFIGMQRNICTANINTQQIDLL
SKLVTIKVGSSRPICDLIAAQVNFLPEMCTKIPGREIVKCSYLGPFLSVSLFAEENVKFA
EAHGKSNVIVYSMYHFRWEMQSMRTSMHTVFHSLLVNVNSRPNTLDYIGKILRYNERRAQ
LACDEKLLARDGFVINLMSVLQQLSVKIKLDRIDPAFPFYKDSLISIENDTKLRYADDEY
KQFIERNFATVTHNANFQTQCWFLTLQAHHLGYMPAIQRYRQKARAIKELQKLIDEIDRT
KSHWENTPYAKRNKQFRERWHKQLKKLTRSKMCSELCLLDPKLLSACMYFYSTVCEYLLY
QIEGRAIEGPFIANVPVQQLKPTDAFAALPEWYVDDIAEFILFAMQHALNDIRQTIDHSI
ITWLLTCVCVPNLIKNPYVTAKLVEVLFVFSLGPQNSLSASVSTMWNHELAQTVLCSALM
KFYVDIETTGQSTEFYDKFTIRYHISHLFKSMWENPVLRQVMITESNSGKQFVKFINMLM
NDTTFLLDECLENLKRIHQTQVLMMNESAWGQMSSEQQQTRLSQLNTDERQCRSYLTLAR
ETVEMFHYLTNDIKEPFMRDEIIDRLSSMLNFNLQQLCGPKCNDLKVRNPAKYGWEPRRL
LGEIFDIYLHLDCDRFAQALAADERSFQKHLFDDAASRIERLGIRSTTEVEKFRSLISRA
HDIYVANQLAEDECADAPDEFKDPLMDTLMSDPVMLPSGTIMDRAIITRHLLNSNTDPFN
RQPLTEDMLVPNIELKERIDAWRKEQRFKRQQEQNVRLNDKSS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagctgaggagcaaaataacaagatgaatgaattaacgccggaagagatacgc
gcacgaagattgcgtacattagcggtagctaataccccaaaagtaaatacgcccagcagt
accacaactacaacaatagagagcagctcaagctccactacaattccgacaacaccagtg
tcagcggatgataatgagaagggcttagcaccccgctgtcccaactatgctactaaggat
tcacgcttattgcgcacccaactcacagcggaggcttctaattcatcagaaaacatgcta
cccccttcggaatctacgaaaatggacgttgacgttgaaatgaattcactaaatacaaca
cctactcaacccatggatatagctaaatgcccattagtgctgaccgctgcttcatcaacc
tcgtctgtattcacacctccaacagaatgtgctataaaagcagaactcggcaattatagc
aacgaagcagctgacagcagtttcgttgaatgtatggagacgacagagattacaaacacg
attagcgaacgtaagcagccggaacagtcgttagatgaacgcattgagggcatgatttcg
aaaatattcaatgctgcatggaatgaacatagtgtcggctcaatgatatgcccgcgtact
gccaattttcttgaacaatatccacatatgcgttttgattttgaaacgatcatacatgat
ctactgctagagtgtgtgctaaagttgtataaagaagagcatgattcaacagagggggct
agcggcggaagcgttgcagcggctaccaacgaggccgatattccgtctacgagtgctagt
agctcagcaatagctgtaagttccagtgacaataataaagcgacttcatcgaaatctacc
gctgcatctgcattggcgacgtctacgtctacaacatcggcagcatcatcagcgaatccc
acttattcaactccgaaaaagatcaaaagcgatgacacggaagtacaagaaatattggca
aatgcagcgccaggcagcgcaggtggcacgcgaccatcgattttcttttcagaaaatgca
atgagtggtggcggcagtagtagtacacgcgacgatgaacaacccacatcatcacaggca
gcgactacctcagctgctgctaatttggattgcaccacctatccagtaccaacgtctgcc
acaatgcgcggcactgtggtcaaacaagatgtcgtcttatacttggtaaattgtcatcgg
ctacgtcaacaatacttaactgataataatgttagcagcagcaatgatccaattgaggcg
gcaacgaaaattcaaagcatactacaacaagtatatgacgccgtaatgcgcaccacaata
cttgtgctcaccgatcgcatctatgaaaattcgaattatatattagatcaatcagccttg
ctggaaatgctctaccaaggtcgcatacccgatggattcttatatgatttggtggctacc
gcctacaaccaatttgaagacttccaacaaatctttacacaacttctgcgtggtctcttc
attggcatgcaacgcaatatttgtacagccaatataaatacacagcaaattgatttgtta
tctaaattggtcaccattaaagttggttcgtcgcggccgatatgtgatttaattgctgcg
caagtgaatttccttcctgaaatgtgtacgaaaataccaggccgagaaatagtgaaatgc
agctatttagggccattcttatccgtctcgctgttcgccgaggaaaatgtgaaattcgca
gaggcgcatggcaaaagcaatgtcattgtgtatagcatgtaccactttcgttgggaaatg
caatcaatgcgcacgtcaatgcatacagtctttcactcgttgctcgtcaacgtaaatagc
cgccctaatacgcttgactacattggcaaaatactgcgctacaacgagcgtcgtgcacag
ctcgcttgcgatgaaaaattgcttgcacgcgatggtttcgtcataaatctaatgagcgta
ttgcaacagctgtcggtgaaaatcaaattggatcgcatcgatccggcttttcccttctat
aaagactcgttgatctccattgagaacgatacgaaattacgttacgctgacgacgaatat
aaacagttcattgaacgtaattttgctacggtcacacataatgccaacttccagacgcaa
tgttggttcctaacacttcaagcgcatcatttgggctatatgccagccatacaacgctat
cggcagaaggcacgcgccattaaagaactgcaaaaactcattgacgaaatcgatcgcacc
aaatcgcattgggagaatacaccttatgcgaaaaggaataaacaatttcgtgaacgttgg
cataagcaattgaaaaagttgactaggtccaaaatgtgcagtgaactatgcttgctcgat
cctaaacttttatcagcttgcatgtacttctattcgactgtttgtgaatatctactatat
caaattgagggacgtgccattgagggcccattcatagccaatgtgccggtgcaacaattg
aagccgaccgatgcatttgctgcactgcccgagtggtatgtcgacgatattgccgaattc
atattgttcgccatgcaacatgccctcaatgatatacggcagacaatcgatcattcgata
atcacatggttgttgacgtgcgtctgtgtgcccaatctcataaagaatccttatgtcact
gccaaattagttgaagtgttgtttgtgttctcacttggaccacaaaattcattaagcgca
tctgtaagcacaatgtggaatcatgaattggcacagactgtgctttgcagcgcgcttatg
aaattctacgtagatattgaaacgactggacaaagtactgagttctatgataaatttact
attagatatcacataagtcatctatttaaatcaatgtgggaaaatcctgtgctacggcaa
gtaatgataaccgaatcgaattcgggtaaacaatttgtgaagtttattaacatgctcatg
aacgataccacattcctgttggacgaatgcctagaaaatttgaagcgcatacatcaaaca
caggtgctgatgatgaacgagagcgcgtgggggcaaatgagctctgaacagcaacaaact
agactctcgcaattaaatactgatgaacgacagtgtcgttcttatttgacacttgcacgc
gaaactgtggaaatgtttcattatttaacgaatgacattaaagagccattcatgcgcgac
gaaataatcgatcgtctcagttcaatgttaaatttcaatttacaacaattgtgtgggccc
aagtgcaatgatctaaaagtacgcaatccagctaaatatggttgggaaccacgtcggctg
ctaggcgaaatttttgatatatatctacatctggactgtgatagatttgcgcaggcatta
gccgccgacgagcgttcatttcagaagcatctatttgacgatgctgccagtcgcatagaa
cgtttgggtatacgttccacaactgaggtggaaaaattcaggtcattgattagtagagcc
catgatatttatgttgcaaatcagctagccgaagatgagtgcgccgatgcgcccgacgaa
ttcaaagatcctctaatggatacgctcatgtcggatccggtaatgctgccatcgggcacg
attatggatcgtgctattataacaaggcatttgttgaacagcaacactgatccgttcaat
cgtcagccattgaccgaagatatgctcgtgccaaatattgaactgaaggaacgtatcgat
gcttggcgtaaggagcaacgttttaagcgacaacaagagcaaaatgtacgcttaaacgat
aagagcagctaa
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