Rhagoletis zephyria (snowberry fruit fly): 108370402
Help
Entry
108370402 CDS
T08513
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108370402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108370402
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108370402
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
RPN7
NTS_TR130
ANAPC15
Motif
Other DBs
NCBI-GeneID:
108370402
NCBI-ProteinID:
XP_017481223
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MLEAIDSEDAEPKYETSQDVEQEYKLIEKAYAEFSNANYELCLETLQELEKCNGTNNKLT
HNRAVAKFYQSGCKDHVTLLKSLSEKADKNNTSASPIAQYNIAIIYYHRHMYQTAIETLM
PLVNKLDDLEELIAGLVSTFMLRLLLVTNQLRKAAAFLEMLQSPERKSSLNLNREGLIRE
EAASSELSVANHENFQRAYKFLAVQTYVLNRKPIAVAEDGSAEYSALKAHQYYIMKDFQM
AAKQLKKVNEIGAISEGNALNTCIANNMGVIHLRVRHYAIAAKFFQDAIAFDKHIAANIR
NVSLYQMGTARTCEILYNLGIAMLHLRRPKEAYKCFFVPLKSYHSNPRLWFRISEACIMD
HEMKMLEEDKKPIITSVVNSGGRKMYFLKPSKSITYEQEPTATESGPNLRFAALALRNAL
TLTTYYKSVFEMNNEDEASAGAEKENWRSVKDNNFCNPSRPISKNSLDNMLCAIRAAYSY
VSLCLGDYACALEMAQELLKAEKLSDAHRLLAHMYAGEALIMMDKLEEARPHFEPTFVSS
LNAFDFETKDWRVKSLDAAQNVVRYNLAVVMALQGDFELSINILSSCTHPIVAAKVMSLK
TYLDIKMGKCT
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgttggaagcaattgactcagaggatgcggagcccaaatacgagaccagccaagatgta
gagcaagagtacaagctaattgaaaaagcttacgcggagttcagcaacgccaactatgag
ctgtgtctggaaacgctgcaggagctcgaaaagtgcaatggaaccaataataaattgaca
cataatcgcgctgtagcaaagttctaccagtccggctgtaaagaccacgttacgctgtta
aaatcactcagcgaaaaggctgataagaataacacctcggctagtccaatcgcgcaatac
aacattgctataatttactatcatcgacatatgtatcaaactgcgattgagacgcttatg
ccacttgtgaataaacttgatgatctggaggaactgatagctggcctagtaagtacattc
atgttacgtttgcttctcgtcacgaatcagttacgcaaggcggcagcttttttggaaatg
ttgcaatcacctgaacggaagtcatctctcaatttaaacagagaagggttgatacgtgaa
gaggctgcatccagtgaattgtccgttgcaaatcatgagaattttcaacgtgcatacaaa
tttttagctgtgcagacatacgtattgaaccgtaagcccattgcggtggccgaagatggg
tcagcggaatattcagcgcttaaagcacatcagtactacatcatgaaagattttcaaatg
gccgcaaagcaactgaaaaaagttaacgaaattggcgctataagtgagggtaatgcactt
aatacttgcatagccaacaatatgggcgtaatacatttacgtgtgcgtcattatgcgatc
gctgcgaaattctttcaagacgccatagcgtttgacaagcatattgcagctaatattcga
aacgtctctctatatcagatgggtacagcgcgcacttgtgaaatactctacaacttgggt
atcgcgatgctgcacttgcgtcggccaaaagaagcctataagtgcttctttgtaccgctg
aaatcatatcatagcaatccgcgtttgtggtttcgtatatctgaagcttgcattatggat
catgaaatgaaaatgctagaggaggataagaagccaattatcacatctgtggtaaattct
ggtgggcgtaaaatgtactttctaaaaccgtcaaaaagtataacatatgaacaggagcca
actgctacagaatctgggccaaacctacgctttgctgctctggcgctacgaaacgctcta
acacttacaacttattataaaagtgtatttgaaatgaataatgaggacgaagcatcggcg
ggcgctgaaaaagaaaattggcgtagtgtaaaggataacaatttttgcaatccctcgaga
ccgatttccaaaaattctcttgataacatgctatgtgccattcgtgcagcctacagttat
gtctcactttgcttaggcgattacgcttgcgcgctagagatggcacaagagctgctgaag
gctgaaaaactttccgatgcgcacaggctcctagcgcatatgtatgcaggagaagcttta
ataatgatggataaactagaggaggcacgcccacattttgagccgacttttgtgtcgtct
ttgaatgcattcgatttcgagacgaaggattggcgggtgaaatcattggatgctgcgcag
aatgttgtacgatataacttggctgtggtcatggcattgcaaggggatttcgagttatca
ataaatattttgagtagttgtacacatccaattgttgcggctaaagttatgtcgctaaag
acttatctcgatataaaaatgggaaagtgtacgtaa
DBGET
integrated database retrieval system
