Rhagoletis zephyria (snowberry fruit fly): 108370408
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Entry
108370408 CDS
T08513
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108370408
09122 Translation
03013 Nucleocytoplasmic transport
108370408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108370408
03041 Spliceosome [BR:
rze03041
]
108370408
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108370408
Spliceosome [BR:
rze03041
]
Complex C
Other components
EJC/TREX
108370408
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108370408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
108370408
NCBI-ProteinID:
XP_017481230
LinkDB
All DBs
Position
Unknown
AA seq
1760 aa
AA seq
DB search
MRRLRTSTKAQTAVTGSGTSTTAKGGSGGVGGASSGVSTTGITPYADRKSAHNTSSFIES
GDSALTTNNRTGAPGALDAAAAATTTFATSASTATAAGRLRHIMMDVKLSADVFKNFEKT
GKSEFLKFLKQQVKENDNPIFGKNDEFKFGISRAIYDLLWHGLRCTLKKDTVLNTLADVV
ALHTDFPSVILDIVNILDAETSLMTDGIQEERLMFSQIVKDLDKVISDKLIKERLEIDTL
QDVGIVKNKVFYTKFIKIKTKLYYKQRRFNLFREESEGYAKLITELNQDFEEGVTATSIM
DIIKSLIGCFNLDPNRVLDIIIESFETRPERRHLFIPLLRAYMPTGSIICEVLGYKFRYF
AETRTPRSLFHVCSLLLKYGVIELHDIYQWLTPVDKTIISEWESDLTEAKEFVRKLNIIV
TNKDKEHVEPEMEKPYDEEKYYANQKFGLCEGLLRVGDWENALKIIKKLPEQSVIVHEPI
ARALAELIHISIDYVYTEKCFKANMRRTKLSDDKKLLQKLQAREFSQMRNYTIPMVIALG
PALHFDTVLMYKLIRILRTIMTDMGVDSLNAPTPNTESETLYFEVMTIMDAAILPALSYL
DCNCPMAEEIWTVLKFFPYHFRYSLYARWKNDTYQVHPLLIRRRGLAHKNIKALMKRVSK
ENVKPVGRLIGKHSHCAPGFLFDYILMQIQIYDNLIGPVVDSLKYLTSLSFDCLGYCLIE
ALAMADRDRFKHDGTSISLWLQSLASFCGAIFKKYNIELSGLLQYVANQLKSQKSLDLLI
LKEIVQKMAGVESAEEMTNEHLNAMCGGELLRGEAGYFSQVRNTKKSSQRLKDALANNDL
AVAICLLMAQQKHCVIYRETAQSHLKLVGKLYDQCQDTLVQFGTFLGSTYSVDEYVERLP
SIIAMLQEYHINADVAFFLARPMFTHQINQKYDQLRKADPNAKKLTTNQKLQKYLEATNL
IMNPIVESVRPLHGPKVWEDISPQFLVTFWSLSMYDLQVPADSYQKEISKLKQLSLQAAD
SKDSNASKNKKEQERYIALMDKLQDERKKQQEHVDKILQRLQQQKDNWFLSRSAKSAKNE
TITQFLQLCLFPRCTFTALDALYCAKFVHTIHNLKAANFSTLLCYDRIFCDITYSVTSCT
ENEATRYGRFLCAMLETVMRWHADQAVFNKECANYPGFVTKFRVSNQFSEANDHVGYENY
RHVCHKWHYKITKAIVFCLDSKDYMQIRNALIILMRILPHYPVLAKLAQIIERKVEKVRE
EEKSKRPDLFVIASSYIGQLKTKAAQMIKESDFHQVTERQLRVESATATATVATAASATV
PLASAGTQASVVTAATTNNVTAITNIINLVETTPKPAPVVQQIPTAQHETTPVLAKQVSN
GDVKSAEKREKEKAPKQVIKMDREPVTSIASSNELETRSTTSIVINDRSEHSERRSSSRS
LKDVKKEERTREREREREREREREREREKEREREQREREREKERERERERERERERELRE
LREREREREHRSHNDELELSGGGGAGGGGGVGSSVTSGSNTIISTRSKREKRRGEERYRL
ESPAVEHIEIVENKHEHHEYERERERDRERERERERARDLSSVSNESNGSSMHRRSQDVI
EYEKDTKRRKVESSTTSSSNSKKQVIDDLVESTKKDRGVKNKERKEKLTEEEKDARKERK
LGRKRERLEESSNTEHKRRREVQNGDDDLRERDKYHTREKSPHLRSETRERSHEKFERDR
STREDRLYGTSKSARSRIGY
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgattgcggacttcaacgaaggcgcagacggctgtgacagggtcaggtacatcg
acgacggcgaaaggtggaagcggtggtgttggtggtgccagtagcggtgtatctacaaca
ggaataacgccgtatgcggacagaaaaagtgcacataacacaagcagtttcattgaaagt
ggtgatagtgccttgacaaccaacaaccgtacgggtgctccaggagccctagacgctgca
gccgccgccaccaccacctttgcaacatcagcgagcactgcaacagctgcgggacgccta
agacacatcatgatggacgtaaagctcagtgcggatgtatttaaaaactttgaaaagacg
gggaagagtgaatttttgaagttcttaaaacaacaagtgaaggaaaatgataatccgatt
tttgggaaaaatgacgagttcaaatttgggatatctagggcaatctacgatctactatgg
catggattacgctgcacgttgaagaaagatacagtgctgaatactttggcagatgttgtg
gcactgcatactgattttccatccgttattctggacattgtgaatatattggatgcagaa
acttcactaatgaccgatggcatacaggaggagcgtctcatgttcagtcagattgtaaaa
gatctcgacaaagtgatctcggataagttgataaaggagcgtttagaaatagacaccctg
caggatgtaggaatcgtaaagaataaggtgttctacacgaaatttatcaaaataaaaact
aagctttattataaacaacgccgctttaatctctttcgcgaggagagtgaaggctacgcc
aagctaataactgagttaaatcaggattttgaggaaggcgtgactgcaacaagcataatg
gatatcattaaatcactcataggctgcttcaatttggatcccaatcgtgtacttgatata
ataattgaatcatttgagacacgcccagaacgaaggcatctttttataccattgctacgt
gcgtacatgccaactggttcaattatatgtgaagtactcggttataagtttcgttacttc
gctgaaacgcgaacgccacgatcacttttccacgtttgttcgctgttgttaaagtacggt
gtcattgagcttcatgatatctatcaatggctcacacctgtcgataaaactataattagc
gaatgggagagcgacctcaccgaggcaaaagaatttgtgcgtaaattgaatataattgta
acgaataaggataaggaacatgtcgagcccgaaatggagaagccatatgatgaggaaaaa
tactatgctaatcaaaaattcggtttgtgtgagggattactcagagtaggtgattgggaa
aacgccttgaagattatcaaaaaattacctgagcaatcggttatagtacatgaacctatc
gcacgtgcgctcgccgaacttatacacatttccattgattatgtgtacacagagaaatgc
ttcaaagctaatatgcgtcgtacaaaattgagtgatgacaaaaaactgcttcaaaaattg
caagcacgtgaattttctcaaatgcgcaactacaccataccaatggtgattgcacttgga
cccgccttgcatttcgatacagtgcttatgtataaacttatacgcattttacgcacaata
atgaccgacatgggtgtggatagtctaaatgctcctacaccgaatactgaatcggaaacg
ctctactttgaggtgatgactattatggacgcagccatattgccagcgctttcctatctt
gactgtaactgtccaatggctgaagagatttggaccgtgttgaaattctttccataccac
tttcgctatagtttatatgcccgttggaagaacgacacatatcaagtgcatccacttcta
ataagacgccgaggtttggcacacaaaaatataaaagcgctgatgaagcgcgtcagtaag
gagaatgtgaagccagtgggacgtctgattggcaaacatagtcattgcgcgccaggcttc
ctctttgactatatcttaatgcaaattcaaatctatgataacttaattggtcctgtcgtg
gattcattaaaatatctcacatctctttcgtttgactgtttgggttattgtctcattgag
gcgctagccatggctgatagggatcgtttcaagcacgatggcacttcgatttcactgtgg
ctacaaagtttagcttccttttgtggtgcaatctttaaaaagtataacatcgaactgagt
ggcctgttgcaatatgtagctaaccaattgaaatcgcaaaagagcttggatctgctaatc
ttaaaggaaattgtgcaaaaaatggccggagtcgaatcggctgaagaaatgactaatgag
catttgaatgccatgtgcggtggtgaattgctccgcggcgaggccggctactttagccaa
gtgcgtaatacgaagaaatcttcacagcgcctgaaggatgcgctcgccaacaacgactta
gctgtcgccatttgcttgcttatggcacagcaaaaacattgcgtaatctatcgtgaaacg
gcgcaaagccatttgaaacttgttggcaagctttacgatcaatgccaggatactttagta
caatttggaacattccttggttccacctactcggtggatgaatatgtcgaacgtttgcca
tcgatcattgccatgttgcaagagtatcacatcaatgcagatgtggccttcttcttggca
cgtccaatgtttacgcatcaaattaatcaaaagtacgatcagttacgcaaggctgatccc
aatgccaaaaaattgacaactaatcaaaaattacaaaaatatctggaagccactaattta
attatgaatccgattgtggaatcagtgcgtccattgcatggtccaaaagtgtgggaggat
attagtccacagtttttggtgaccttctggtcgcttagtatgtatgatttgcaagtgccc
gccgatagttatcagaaggaaatatccaagttgaaacaactttcactacaagctgcagac
tcaaaggattcgaatgcctcaaagaataagaaagagcaggaacgttacattgctttgatg
gataaattgcaggatgagcgcaaaaaacagcaggagcatgttgataagattttacaacgt
ttgcaacaacaaaaggacaactggtttctatcgcgttctgccaaatcagcaaaaaatgaa
accataacacaattcctgcagttgtgtctctttccaaggtgcacctttactgccctcgat
gccctctactgcgctaaattcgtacacaccatacataatttaaaagctgctaatttctcc
acactcctatgctacgatcggatattttgcgacatcacctactccgtgacgtcctgcacc
gaaaacgaggccacccgctatggtcgctttctctgtgccatgctggaaaccgtaatgcgt
tggcatgccgatcaggctgttttcaataaggaatgtgccaactatcctggctttgttacc
aaattccgtgtcagcaatcaattttccgaggcaaacgatcatgttggctatgaaaactat
cgtcatgtctgtcataaatggcattataaaattaccaaagcaatcgtattctgtttggac
tctaaagactatatgcaaatacgtaacgcacttatcattctcatgcgcatactaccgcat
tatccagtactggctaaacttgcccaaatcattgaaagaaaagtggagaaagtgcgtgaa
gaagagaaaagtaagcgtcccgatttgtttgtgattgcctcaagttatattggacagcta
aaaacgaaggctgcacagatgataaaggaaagcgattttcatcaggttactgagcgacag
ttgcgtgttgaatcggctactgcgacagcaacggttgcaacagccgcttcagccactgta
ccattggctagcgcaggcacgcaagctagtgtggtcactgcagcaacgaccaataatgta
acagcgataacgaatataattaacttggtagaaactactcccaaaccagcgccagtagtg
cagcaaatacccactgcacaacatgaaacaacgcccgttttggcaaagcaagtgagcaac
ggcgatgtgaagagtgcggaaaaacgcgaaaaagaaaaagccccaaagcaggtcattaaa
atggatcgcgagcctgtgacaagcattgcttcaagcaatgagttggaaacgagatccacc
acttcaattgtgatcaacgatcgcagcgaacacagtgaacggcgtagtagcagccgttca
ttgaaggacgtcaagaaggaggaacgtacacgtgaacgcgaacgcgagcgtgagcgtgag
cgtgaacgggagcgggaacgcgaaaaagaacgtgagcgcgagcaaagagagagggagcgt
gagaaggaacgtgaaagggaacgcgaacgtgaacgtgagcgtgagcgtgaattgcgagag
ttgcgtgaacgagagcgtgagcgtgaacatcgcagtcataatgatgaattggagctgtcc
ggcggcggtggtgctggaggcggtggtggcgtcggtagcagtgtgactagtggcagtaat
acgataatttccacacgttccaaacgcgaaaagcgacgtggtgaagaacgttaccgcttg
gaatcaccagctgtagaacatattgagatagtggaaaacaagcatgagcatcatgaatac
gagcgcgaacgcgaacgtgaccgagagagggaacgagagcgtgaacgtgctagggattta
agttcggtatcgaatgagagcaacggatcgtcgatgcatcgacgcagtcaggatgttatt
gaatatgaaaaagatacgaaacgccgcaaagtggaatcgtcgacaacttcttcgtcaaac
tcaaagaaacaggttatagatgatttggttgagagtacaaagaaagatcgtggtgttaag
aataaagaacgcaaagaaaagctaaccgaagaggagaaggatgcacgtaaagaacgaaaa
ttgggacgcaaacgcgaacgactcgaggagagctccaacacagagcataagcggcgaagg
gaagtgcaaaatggcgatgatgatttgcgtgaacgcgataaatatcatacgagggaaaag
tcgccccacttgcgcagcgagacccgtgaacgttcgcatgaaaaattcgagcgtgatcgc
agcacacgtgaggatcgtttgtatggcacttcaaagtcggcgcgttcgcgcataggctac
taa
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