Rhagoletis zephyria (snowberry fruit fly): 108370685
Help
Entry
108370685 CDS
T08513
Name
(RefSeq) maternal effect protein staufen isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rze01009
]
108370685
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108370685
Protein phosphatases and associated proteins [BR:
rze01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108370685
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108370685
mRNA cycle factors
Stress granule specific factors
108370685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
108370685
NCBI-ProteinID:
XP_017481554
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MQHHAHVARTAPPHMRAHHMAVPPPHSQTQSHMPRLNMTHVPPPPTGQQQQQQPLQSSQQ
QNQPQHLTNGPAPSSGGGSAAVITGSKIGAPSHMRDHHTRLNQQALQQHQPQHPPSMHNS
TQLQKLRQQHQHINNNNNSNSTNKNNYHHHQPQQYNSASNTHGNVLPAQTAQQHQQKQTS
QTSHHTSRNPSTHQHQSQHQQHPLHQQQPQLQQQQQQQPPPLQPQQQQQHTLAVSQMPPQ
QALGHLKHPQQHVQQTPAAQQHPQPQQQIQTTLNPASNIVSGHSQPPPQPPTQHPQQQPP
AALNYYTGGVTQINNNNIHKSKYKPNVGGGGGNGAGGGGMQPKTILQNPNRILKARLHSS
AAANNIEVTTIGPLVSIEETNKVSKSSNISDGGGVNNVVSAAEASVKANVVVAVTASAVI
PSNIRQECTKNGQNTSQNDASINDAKKENVTSGTQNAKISNEASSSNATSNNNNILSNED
NTVPKNSKEKTPMCLVNELARFNKITHQYRLTSEKGPAHCKRFTVTLKLGDEEYSAEGFK
IKKAQHLAAAEAIEKTKYKHPVPKVIRRNTDGEGSSSRANITPTVELNALAMKLGQQTYY
LLDPRQVASPDSMGPPPDAMMPPRYGVPPPPSHALPPPGMGSGHMMPQHAPPPPPPHVHM
MDPPAYLRRNGPYAVPPAPPLHGHPTSGPGMRPRYGAPPQRAYMPKYGQQQRYALMAPPH
MAGGPHNGMAPPPPMPHHPHHPHHGSVPHRYGMPAALTRVTLVVGKQKFVGMGYTLQQAK
HDAASRALQVLKAQAATQLNEALNNSLEESDSKSPISLVHEIGIQRSMTVHFKVLREEGP
AHMKKFVTACVVGSIVTEGEGNGKKTSKKRAAEKMLEELKKLPPLTPTKSPVKRIKVKTP
SKAAANADGAGGGSGKSGGAGGERRKRGSGSIKEKSEAEADAENPITQLIQLQQNRKEKE
PVFELIAKNGNENSRRREFIIEVSAHGMVARGTGNSKKLAKRNAAQNLLIAMGESDTDTA
GVNTASAPATIQTAAAKERYARAPATAIDGVSSHSEQPNTVLQPIAEVPPPAVAAEAHLD
LPLVSTPAGQVPGILILRHNKKNAVKKKECAPSASCVMAENNENKRAADLTIGAGVQAVQ
QPAVKSAATDIVKESEVEIALSANPPSAVVQPVAAPITNNAQKAVSSAPSSATTTTTARA
SSSASKPAGVHMKDQLLYLAKLLGFEVNFSDYPKGNHSEFLTIVTLSSEPPQICHGVGSS
AEESQNDAARNALKILSELGLNNAAK
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatcatgcacatgttgcacgcacagctccgccgcatatgcgtgcccatcacatg
gcagtgccgccgccgcactcgcagactcagtcgcacatgccgcgtttgaatatgacacat
gtaccaccgccgccaactggacaacagcaacagcaacagccactgcaaagcagccagcag
caaaatcagccccaacatcttaccaatggtccagcgccgagcagcggtggcggcagcgct
gcagtcatcaccggatcgaaaattggcgcgccatcgcatatgcgcgatcatcatacgcgt
ttgaaccaacaagcacttcagcaacaccaaccccagcatcctccgtcgatgcacaatagc
acgcagctacaaaaattacgtcagcagcatcaacatataaacaacaacaacaacagcaat
agtacaaacaaaaacaactatcatcatcatcaacctcagcaatacaacagcgcaagcaac
acgcacggcaatgttctgccagctcaaacagcacaacaacatcaacaaaaacaaacatcg
caaacgtcacaccatacgtcacggaatccatcaacacatcagcatcagtcccagcatcaa
caacatccactacaccaacaacagccgcagctgcaacagcagcagcagcagcaaccaccg
ccgctgcaaccacagcagcagcaacaacatacacttgcagtgtctcaaatgcctccccag
caggcgcttggacatttaaagcatccacaacaacatgtgcaacaaacgccagctgcacag
cagcatccacaaccacaacaacaaatacaaacaacattgaatccggcaagcaatattgtc
agcggacactcgcagccaccgccacagccacccacacaacatcctcaacagcaaccacct
gccgctttgaactattacactggcggcgttactcaaataaacaacaataatatacacaag
tcaaaatataaacccaacgttggcggtggcggtggtaatggagctggtggtggtggaatg
caaccaaaaactattttacaaaatccaaatcgcattctgaaagcacgattgcacagcagc
gcggcagcaaataacattgaggtgaccactattggtcccttggtgagcatagaagaaact
aataaggtatcaaagagcagtaatatcagcgatggcggcggtgtcaataatgttgtaagc
gccgcagaggcatcagtaaaagcgaatgtggttgtagctgtaactgcaagcgcagtaatt
ccttcgaacattaggcaggagtgtacgaaaaatgggcaaaacacaagccagaatgacgct
tccataaatgatgctaaaaaggaaaacgtgacgagtgggacacaaaatgcaaaaattagc
aatgaagcgagtagtagcaatgcaacaagtaataacaacaatattttgtccaacgaagac
aacaccgtgccaaagaattcgaaagagaagaccccaatgtgtctcgtcaacgagctggcg
cgtttcaataaaatcacacatcagtatcgtttaaccagtgaaaagggtccggcgcattgc
aagcgattcactgtcactctaaaattgggcgatgaggaatattcagcggagggtttcaaa
atcaagaaagctcaacatctagcagcagccgaagctattgaaaaaaccaaatacaaacat
cctgtgccgaaagtgattcgtcgcaatactgatggagagggcagttcatctcgcgccaat
attacgcccacagttgaattgaatgcgttggccatgaaattaggccaacagacatattat
ctattagatccacgtcaagtggcatcacccgatagcatgggaccaccaccggacgccatg
atgcccccgcgctatggtgtaccaccgccaccatcgcatgcgcttccaccacccggcatg
ggcagcggtcatatgatgccccaacacgcaccaccaccgccgccaccacatgtgcatatg
atggatccgcctgcatatctgcgacgaaatgggccctatgcagtaccgcctgcgccaccg
ttgcacggtcatcctacctccggaccgggcatgcgtccacgctatggtgcaccacctcag
cgcgcatacatgccaaaatatggccagcagcaacgatatgcattaatggcgccaccgcat
atggctggtggtccacacaatggcatggccccaccaccaccgatgccgcaccatccgcat
catcctcatcatggttcagttccacatcgttatggtatgccagcagcattgaccagagtt
acgcttgtcgttggcaagcagaaatttgttggaatggggtacacattacaacaagccaaa
catgacgcagcgtctcgtgcgttacaggtgcttaaagcgcaggccgctacacagctgaac
gaagcactaaataacagcctggaggaaagcgatagcaaatcacccatctcgctggtgcat
gagatcggcatacaacgtagcatgacggtgcatttcaaagtgctgcgcgaagaaggaccg
gctcacatgaagaagttcgtaaccgcatgcgttgtgggctccatagtgacagagggcgag
ggcaatggaaagaaaacatcaaagaaacgcgccgccgaaaaaatgttggaagagctaaag
aagctgccgccactaacaccaacaaagtcgccggttaagcgtattaaagttaaaacaccc
agcaaggctgcagcaaatgctgacggagctggtggtggcagtggaaagtctggtggcgcc
ggtggtgaacgacgcaaacgcggcagtggctcgatcaaagagaaaagtgaagcagaggcc
gatgcagagaaccccataacgcaactcatccaattgcagcagaatcgcaaagaaaaagaa
cctgtgtttgagctaatagcgaaaaacggaaacgagaactcgcgtcgacgtgaatttata
atcgaggtgagcgcacatggcatggtggcacgcggcaccggcaacagcaaaaagctagcc
aaacgtaatgctgcacaaaatttgctcatagccatgggtgaaagtgacaccgataccgct
ggcgtcaacactgcctcagcacccgccaccatacagacagctgctgctaaagagagatac
gcccgagcgcctgcaaccgccatcgatggagtctcttcacattcagagcagccgaataca
gtcttgcagccaattgctgaagtaccgccacctgctgttgccgccgaggcgcatcttgat
ttgccgctcgtgtccaccccagctggacaagtacccggcattttgatactgcgccataat
aaaaaaaatgccgtcaagaaaaaggagtgtgcgcccagtgcaagttgcgtaatggcagag
aataatgaaaacaaacgtgccgccgatttaactattggcgctggtgtgcaagcagtgcaa
cagcctgctgttaaaagcgctgctactgatattgtgaaagaaagtgaagtggaaatcgcg
ttgagcgctaatccacctagtgctgtggtgcagccggtggcagcgcctattaccaacaat
gctcaaaaagctgttagcagtgcacccagcagcgcaacaacaacaacaacagcaagggcg
agcagcagtgcatccaagccagcaggcgtgcatatgaaggatcagctgctgtaccttgca
aagcttttgggattcgaggtgaacttttccgattatccaaagggaaaccatagcgaattt
cttaccattgtaacgctctcttcggaaccaccacaaatttgtcatggcgtgggcagcagc
gctgaggaatctcaaaatgatgctgctagaaatgcattgaaaatacttagtgaattaggc
ctaaataatgctgcgaaataa
DBGET
integrated database retrieval system
