Rhagoletis zephyria (snowberry fruit fly): 108370714
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Entry
108370714 CDS
T08513
Name
(RefSeq) helicase domino isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108370714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rze03036
]
108370714
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
108370714
SWR1 complex
108370714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
HDA2-3
Motif
Other DBs
NCBI-GeneID:
108370714
NCBI-ProteinID:
XP_017481583
LinkDB
All DBs
Position
Unknown
AA seq
2999 aa
AA seq
DB search
MYFLFLIVDASNMNEGESAGGGHQRASPAPPAVSDHRSILSSTTSTASVDTITGYSGTSI
PATFTVATPDSFQVIATTFVDSPITPRSFQQAFTQQHLPKQLQQNSPNRISTTNIQSPPN
KPLQQKFQYQGAQAQQLPMPQTTRLAETTNIAATDIVSEAQNQIDTKSGIQITTRVLATD
TSGSLVNSFPSSTSTTSLIAEAGQQDSPLAKRPKLGGSIGSSLTASLLPTSGSTQDNSNT
ALSAPEDINALKKRILEQKYLRLRSLKERHTENVAELFYLQSGGNMMDYPTWRKKPPTPQ
FVTFSNAYRLDQLVNEDRAAALVQQQQQQKATDNIATIIGVASTNQGTQQQQQQHTQQSQ
KQTQDYLAEIINKTSSQSQIATDISNSSGSNSNSSCSGTSSGVAQSLGNTPTVIATATTL
TPGSGGGGNLTTTDASGEALPQGAEIKIPAVGATPVAVSTKLPAAVVQLTQQGHIPGRPL
GGRHGMVFGQIPAPPAVGNSTLPLVPGGTPLVPAIGSGGSPAVLRRNGNGAALASAGTPG
TTLHNNPPTPLYSPTPNAVLVHASVNGNVTSAASAAGSSGTSGALTGSTAGSLSTSGSAG
TSGAAANSAQEFSFKAKQEVYVLQRISELQREGLWTEKRLPKLQEPSRPKAHWDYLLEEM
VWLAADFAQERKWKKNAAKKCAKMVQKYFQDKANAAQKAEKAHEAHLKRIAAFLSKEVKM
FWSNVEKLVEYKHHTKLEEKRKKALDQHLSFIVDQTEKFSQQLAEGMNKSIIETAAGASG
APSMDSSRISSPKRETAGNGSDDDFRPESGSEDDEETIAKAEEEAADVKEEVAALEKESQ
MDLDDFLKDLPKGYLENRDKILLEEVDPKSSQEDDADTEFEANEDSDDDENTISKQEEEE
KDIDHQKEIDELEADNDLTVEQLLEKYKSGKIDEPKGTLTRRRGAAPPAKKRAKMEIDSD
DDEVENDTSSEGTVVETESESDNEEDTNDEENSSDVSEENEQEDGLKSLLEDVSLVGLCA
LIFIETILSSTLQTEGNSKDDMIKDAAALAESIQPKGNTLSSTNVVTPVPFLLKHSLREY
QHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACVKGNWGPHLIVVPSSVMLN
WEMEFKKWCPAFKILTYYGTQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWK
YLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHR
EFKEWFSNPMTGMIEGNMEYNETLISRLHKVIRPFLLRRLKKEVEKQMPKKYEHVVMCRL
SNRQRYLYEDFMSRSKTKETLQTGNLLSVINVLMQLRKVCNHPNMFEVRPTISPFQMEGI
TYEAPRLVYNLLDYDPFTHIDLHSLNLLLIDLELTLTAYVSHKSRVLEPPRKLIEEIDSA
PAPPPPCPRGKFKFYIRVRDQQVQQNLSQHSTAMVRVGASPAMRTDGKKVIPLRETNTAN
LRLVKRLNNINPVNTSKLPVLSMAPSTSTSAAISLASSGVGGSIRTASGISVTRVQVAPQ
ANANLTPPAAKIAKLVQPGSGKPYFLVTSSAGSSSLSDTVSGSNASGSRLTLVCKSGSGN
TSLTAMSASSSGKSGITIKPKPENSKLLTTIAQQVKSTTTDAGGTDDLGSAAMDVDESET
AGTETSESDPIYNMQQILEKRKEQRLARLKLVAAVNRRCIDGVPIYGADCRETLTKCVKP
SQTLEYSSWQTRSHTNCCTAMARRDCWTLSKIIKSYEKRVEDLRQTFSNFVIYVPPACAP
RIRFYVQHLTSGRLQRERRIENTVAQYCSPKLTLLHPVISAMTTQFPDPRLIQYDCGKLQ
TLDLLLRQLKSGQHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQVLMERFN
GDKRIFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL
VSEKTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFNLEQGDQDGGETAAVV
GAANGGRAEKPTTSSASAAAIVSELGSEIETEKQSLRAFESALAAAEDEQDVQATKTAKA
EAAADLAEFDETIPIDETTTADGAAAAEMSKADLEMQNLVKQLSPIERYAMRFVEETGAA
WTAEQLRAAEEEIEAQKREWEANRLAALQKEEEMLKKEAEADEMLTYNRKDASNQVNNKN
QGSTIRRKAMIKSNRRVLKKQLGRGKVDRRRRSSEAATTLATSSRXVRARQNSNMSKRRA
PVKTRRATNQCLRGKTVRAGRANNASSKSRGNSVEREKEPARSVQGSAKGSNMRRAKRSP
SPTASEDDLETATTVKSTRKTTRTSMAAAAAATTAYADCDILSNDGTTNDKRVTAAGVRR
NATGVKNQRLLNRRLLRLKANSVATTQMRKRKISGGAAAAKSPPAKRKPVEKLTNRSAAQ
RRQLRNSPKKNASANKSKSNRRRESESDDNEDEEEEDDDEVAASDDKEEIEQSASESEHI
QDDSDKDEAEDDSEQEAVEDIGTAASAEEDDTENGNMNYDSAHSHCSEDLREEESQEDVS
EEEEEKAKTARKKSPRKYSPHWKYNSRANNVTPPPPAAITEDESAAAAATAAEGEESQND
ASSYVTVLDTAEHDFDDDVDEDEEIVYVSDNNANDDNVNDNDSENEKTDARTRAFVNERR
RNDSEAPTNSNSLDVWNAHTQIQDTTMTNSTYYNVSDESDSDENETPLAHLNASATKRGT
ANSSLSATKATATNVTLTPAAYQNHVDVNSPRTRSRGAVKINLWTLDVSPVLPDVRSGAT
RMAKKDTQTQNRRGRVVAATKVASATEAAASREQCEDEMGEEEHLIDSDAENATSNHKPR
PVSTTVQTTVVSTPNCRRAATATITTLKLNAATTHRRRQQKPRVAVSAANIRTGTTTLHR
WLLKTTKTTRAADVDASSEADEGEILDPLADNSTLSSMDSTGSITMAKVTAKRSSNGPT
NT seq
9000 nt
NT seq
+upstream
nt +downstream
nt
atgtattttcttttcctcattgtagatgcatcaaacatgaatgaaggtgagtcagcagga
ggggggcatcaacgggctagcccagcccctcctgctgtatccgaccatagatcaatttta
tcgtcaacaacctcaacagcatcggtggataccatcaccggctatagcggtacaagcata
cccgcaacctttacagttgcaactcctgattcctttcaagtcatagcaacaacgtttgtg
gattcacccattacacctcgcagctttcaacaagcgtttactcagcaacatttgccgaaa
caacttcaacaaaattccccaaatagaatatcaacaacaaatattcaaagtcctccaaac
aaaccgctacaacagaaatttcaatatcaaggggcgcaggcgcagcagttgcctatgccg
cagactacacgtttagcggaaacaactaatatagcagcaactgatatagtttcggaggca
caaaatcaaattgatactaaatctggtattcagattacaacacgcgtgctagcgacggac
acgtccggcagcctggttaatagttttccatcctcaacgagtacgacaagtttaattgca
gaggcgggacaacaagattcgccgctagccaagcgtcccaaacttgggggcagtatcggt
agtagcctaactgcttcgttgttgccaacaagtgggagtacgcaggacaacagcaatacg
gcattgtctgcaccagaggatataaatgcgctcaagaagcgcattttggagcaaaaatat
ctccgtttgcgaagtcttaaagaaagacacacagaaaatgtcgccgaattattctacttg
caaagcggtggcaacatgatggactacccgacgtggcgtaagaaaccaccaaccccgcag
ttcgtcaccttcagcaatgcttatcgtctagatcagttggttaacgaggacagagctgct
gcattagtacagcaacaacaacaacaaaaagcaactgataatatcgcaacaataattggt
gttgccagtaccaatcaaggtactcagcaacagcagcaacaacatacacaacaatcacaa
aaacaaacacaagactatttggctgaaatcataaataaaacgagttcgcaatctcaaata
gctacagatataagtaatagtagtggtagcaacagcaacagcagctgtagtgggacttca
tcaggggtcgcacagagccttggtaacacacctacagttatagcgacagcgacaacttta
acgcctggcagtggtggtggaggtaatttaaccaccaccgatgcgagtggcgaagcgttg
ccacagggtgctgaaattaaaattcccgccgtaggcgcaacgcctgtggctgtttctaca
aagctaccagcagctgttgtacaactcactcaacaaggtcacatacccggtagaccttta
ggaggtcggcacggtatggtatttggtcaaatacccgccccaccagctgtaggaaattct
accttacctttggtgccaggtggcacaccgcttgtacctgctattggtagtggtggctct
cctgcggtattgcgacgcaacggcaatggcgccgctcttgcgtcagctggcacaccaggc
accactttgcacaacaacccgcctacgccactttactcgccaactcccaacgccgtgttg
gtgcatgcctccgtcaatggtaatgtcacaagcgccgccagtgctgctggcagtagtgga
acaagtggcgcattgaccggctcaactgccggaagcctaagtacgtccggcagcgctggc
actagtggcgctgcagcgaacagcgcgcaagagttttcgttcaaggccaagcaggaggtt
tatgtgctgcagcgcatctccgagttacaacgagagggattatggactgaaaaacggttg
ccaaaactgcaagagcccagccgcccaaaggcacattgggactatttgttagaggagatg
gtttggttggcagcggattttgcgcaagagcgcaaatggaagaaaaatgctgccaagaaa
tgcgccaaaatggtgcagaagtacttccaggacaaagcgaatgcagcacagaaggcggag
aaggcacatgaggcacacttgaagcggatagcggccttcctctccaaagaggtgaaaatg
ttttggtcaaatgtggagaaattggtggaatacaaacatcatacgaagctcgaggagaag
cgtaaaaaggcgcttgatcagcatttaagcttcattgtcgatcagacagagaaattctca
cagcagctggccgagggcatgaataaaagcataatagaaacagctgcgggggctagtggt
gcgccaagcatggattcgagtaggatatcatcgcctaagcgtgagaccgcgggcaatggg
tctgatgatgatttccgtccagaatctggatcagaagatgatgaggaaacaattgccaaa
gctgaagaggaagcggcagacgtcaaggaagaggttgcggccttagaaaaagaatctcaa
atggatcttgatgattttctgaaagatctgccaaaaggctacttagaaaatcgcgataaa
attttacttgaggaagttgaccccaaaagcagccaagaagatgacgcagacaccgagttc
gaagcaaatgaagacagcgatgacgatgagaacacgattagcaaacaagaagaagaagaa
aaagatattgatcatcagaaagaaattgatgagttggaagcggataacgacttaaccgtc
gaacagctgttggaaaagtacaaatcgggcaagattgatgaaccaaaaggaacgttgacg
cgaagaagaggcgcagcgccgccggcaaagaaacgcgctaaaatggaaattgactcggac
gatgatgaagtggagaatgacaccagtagcgaaggcactgtggtggaaactgaaagtgag
tcagataacgaggaagataccaatgacgaagagaattcctcggacgtaagcgaagaaaat
gaacaggaagatggactgaagagtctgttggaagatgtaagtttagtgggcttgtgtgct
ttaatttttattgagactattctttcttctaccttgcagaccgagggcaacagcaaagat
gacatgattaaagatgccgccgctctagccgaaagcatacaacctaagggtaatacgctg
tcttcaacaaatgtagtcactccggtgccatttctgcttaaacactcactgcgtgagtat
cagcacattggtttggattggcttgtcaccatgaatgaacgtaaattgaacggcatactc
gctgatgaaatgggtttaggtaaaaccattcagacgatagcgctgctagcgcatttagca
tgcgttaaaggcaattggggtccacatctgattgtcgtgccatcatcggtgatgctcaat
tgggaaatggaatttaagaaatggtgtccggcatttaagatactcacatactatggcacg
cagaaagagcgtaagcttaagcgtgtgggctggacaaaacctaatgcattccatgtgtgc
ataacatcctacaaattggtggtgcaggatcagcagagtttccgtaggaaaaagtggaaa
tatctgatattggatgaggcgcaaaacattaaaaatttcaagtcacaacgctggcagctg
ctgctaaatttctccacagaaagacgtctattgctcaccggcactccactacaaaacgat
ttaatggaattatggtcgcttatgcattttctaatgccatatgtgttttcatcgcatcgc
gaatttaaagagtggttctccaatcctatgaccggtatgattgaaggcaacatggagtac
aatgaaacgctcataagccgactgcacaaggtcatacgcccttttttgctgcgacgtctc
aaaaaagaagtcgaaaagcaaatgcccaagaaatacgagcacgtcgtaatgtgtcgcttg
tcgaatcgtcaacgctatttgtatgaagattttatgagccgctcaaaaactaaggaaaca
ctgcaaacaggcaatctactaagtgtcatcaatgtgcttatgcagctacgtaaagtctgt
aatcatccaaatatgtttgaagtacgtccaaccatttcgccatttcaaatggaaggcata
acctatgaagcgccaaggctagtttataatttgctggattacgatccattcacgcacatc
gatttgcattcgttaaatttacttctaattgatttggaactcactctcactgcttacgtt
tcgcacaagtcacgcgttctggagccaccccgtaagctaattgaggaaatcgacagtgca
ccggcgccgccaccaccctgcccgcgtggcaaattcaaattttacatacgcgtacgcgat
cagcaagtgcagcagaatctgagtcagcacagcacggctatggtacgcgtcggcgctagt
cctgctatgcgtacagatggcaagaaagtaataccattgcgggaaacgaatacagcaaat
ttgcgacttgtaaagcgtttgaacaatataaaccccgttaacacgtccaaattgcccgtc
ttgtcgatggcaccttcaacatccacttcggcggccatttccctggccagcagtggcgtt
ggtggtagcatacgcaccgcctcgggcatatcagtaacgcgcgtacaagtcgcaccacaa
gcgaacgctaatttgacgccacctgcggcaaaaatcgccaagctggtgcagcctggcagc
ggtaagccgtacttcctggtaacatcttcggctggtagcagttcgttgagcgataccgtg
agtggaagtaacgcttcgggtagccgtttaacgttggtgtgcaaaagcggcagtggcaac
accagtttaaccgctatgagcgcgagtagcagtggaaagagcggcataaccattaagcca
aagccggaaaattcgaaattattaaccactattgcgcagcaggtgaagagcaccaccacc
gatgctggaggaaccgacgatttggggagcgctgcgatggatgttgatgagtcagaaact
gcaggaaccgaaacgtccgaatccgatccaatatataatatgcaacaaatactggaaaag
cgtaaggagcagcgtttggcgcgcctcaaattggttgcagctgtgaatcgacgctgcata
gacggtgtgcctatatatggggcggactgtcgcgaaacactgacgaaatgtgtgaagccg
agccagacactggagtactccagctggcaaacgcgaagtcacaccaactgttgtacagcc
atggcgcggcgcgactgctggacgctcagcaaaataatcaaatcatatgagaagcgcgtt
gaagatctgcgacaaaccttcagcaatttcgtcatctatgtgccaccggcgtgtgcgccg
cgcatacgcttctacgttcagcatctcacatcgggacgtttgcagcgtgagcgtagaatt
gaaaacactgtcgcacaatattgttcacccaagctgacattgctgcatccagtcatctca
gcgatgaccacacagtttccagatcctcgtctcatacaatacgattgcggcaaattacaa
acccttgatctgctgttgcgtcaactaaaatccggacaacatcgtgtgctgatattcaca
caaatgacaaaaatgttggatgtgctggaggcgttccttaactaccatggacacatctac
ttgcggttagacggttcgacgcgcgtcgaacagcgtcaagtgctaatggagcgcttcaat
ggcgacaagcgcattttctgcttcatattgtcgacacgttccggtggcgttggtgttaat
ttaaccggcgcggatactgtgatattttacgattccgattggaatccaactatggacgcg
caagcgcaagatcgttgccatcgtattggtcaaacacgtgatgtgcacatctatcggctg
gtgtctgagaaaacaatcgaagtgaatatactaaaaaaggcgaatcaaaagcgcatgcta
agcgatatggcgatcgaaggtggcaactttacgaccacttatttcaagagttccaccatc
aaagatcttttcaatttggaacaaggcgatcaagatggcggcgaaacagctgcagttgtt
ggtgcggctaacggcggtcgtgcggagaaaccaacgacttcttcagcaagtgcggcagca
attgtcagtgagctgggcagtgaaattgagacggaaaagcagtcgttgcgtgcgtttgag
agcgctctagctgctgccgaagacgagcaggatgtgcaggcaaccaagacagcgaaggcg
gaagcggctgccgacttggcagaattcgatgagaccatacccatcgatgaaacgacaacg
gcagacggcgctgcagcagcggagatgagtaaagcggatttggaaatgcaaaatctcgtg
aagcagctctcgccaatcgagcgctatgctatgcgtttcgttgaagaaaccggtgcagca
tggaccgccgaacaactgcgtgcagcagaggaagaaatcgaagctcaaaagcgcgaatgg
gaagccaaccgcttagctgcattgcaaaaggaagaggagatgctgaaaaaggaggctgaa
gctgatgaaatgctcacctacaatcgcaaggacgcaagcaatcaggttaataataaaaat
caaggatctacaattagaagaaaagctatgattaagtcgaatagaagagtacttaaaaaa
cagttagggcgaggtaaagttgataggcgccggcgtagcagtgaggctgctactactctg
gcgacaagtagccgtgnggtgagagcacgccagaatagtaatatgtcgaagaggcgagca
ccagtgaaaactcgtagagcgactaatcagtgtttgcgtggtaaaacagtcagagcaggc
agggccaacaatgccagtagtaagagtagaggtaatagtgttgagcgtgagaaagaacca
gcgaggagtgtgcaaggttctgctaagggtagtaatatgcgcagagcaaagaggtcgccc
tcaccaacagcatcggaagatgatttggagacggcgacaacagtgaaatccactagaaag
acaacgcgcacgtcaatggcagcagctgcagccgctacaacagcatatgcagattgcgat
atattgtcgaacgatgggacgacaaatgataaacgcgtaactgctgcgggggtaaggaga
aacgcgacgggtgtgaaaaatcaaagactgctgaatcgccgcttgctccggctcaaagcg
aattctgttgcgacgacgcaaatgcgaaagcgtaaaataagcggtggtgctgctgcagcc
aagtcacccccagccaagagaaaaccagttgaaaagttgacgaacagaagcgcagctcag
cggcgtcaactgcgcaacagtccgaagaagaatgcgagtgcaaataagtctaagtctaat
cgccgcagagaaagcgaaagtgatgataatgaggacgaagaagaggaggatgatgatgaa
gtagccgctagtgatgataaagaggagatcgagcaatcagccagtgaaagcgaacatatc
caagacgacagtgataaggacgaagctgaagatgatagtgagcaggaagctgtggaagat
attggtacagcggctagtgcggaagaggacgatacggaaaatgggaatatgaattacgac
agcgcacatagccattgcagtgaagatttgagggaagaagaaagtcaagaggacgtgagt
gaagaagaagaggaaaaagcaaagactgcgcgcaaaaaatcgccaaggaaatactcaccg
cactggaagtacaactcacgggctaacaatgttacaccgccgccgccagctgctatcact
gaagacgaaagcgccgccgccgccgccaccgctgccgagggcgaggagagtcagaatgat
gcctccagctatgtaacagtgctcgatactgccgaacacgacttcgatgatgacgtagat
gaggatgaagagatcgtatatgtgagcgacaataatgctaatgacgataacgttaacgat
aacgacagcgaaaatgagaaaactgacgcgcgaacacgtgcatttgtgaatgaacgacga
cgaaacgattcggaggcgcccaccaattcaaacagtttggacgtgtggaatgcacacacg
caaatacaggacaccaccatgacgaactcgacatattacaacgtgtcggacgaatcagac
tccgatgaaaatgagacgcctctcgcgcacttgaacgcctcggcgacaaagcgcggtacg
gcgaatagcagcttgtcggcaactaaggccacagccacgaatgtgacgttaacacctgca
gcgtaccagaaccacgtcgatgtcaacagtccgcgtacgcgttcacgcggtgcggtgaaa
atcaatctgtggacattagatgtgagtccggtgctaccagatgtgcgatcaggtgccacg
cgaatggcaaaaaaagatacacaaacacaaaaccgacgtggtcgagtggtggccgcaaca
aaagtcgcatcggcaacggaagcggcggcgagtagagagcaatgcgaagacgaaatgggc
gaagaagagcacctgatagacagtgatgcggagaatgccacctccaatcacaagcctcga
ccagtcagtacgaccgtgcaaacaacagttgtaagtacgccgaattgcagacgagcggca
acagcgacgataacaacgttgaaacttaatgcagcaacgacccatcggcgacggcaacaa
aagccgcgtgtcgccgtttctgctgctaatatacgtactggcacaacgacattacaccgt
tggctgctcaaaaccacgaaaactaccagagctgctgacgtggacgccagctcagaagcg
gacgaaggagaaatactcgatccgctggccgacaatagtacgctctcaagcatggattct
acaggatcgataacgatggcgaaagtgacagccaaaaggagtagtaatgggccgacatga
DBGET
integrated database retrieval system
