Rhagoletis zephyria (snowberry fruit fly): 108370934
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Entry
108370934 CDS
T08513
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108370934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108370934
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108370934
Complex C
U5 SnRNP specific factors
108370934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108370934
NCBI-ProteinID:
XP_017481875
LinkDB
All DBs
Position
Unknown
AA seq
2363 aa
AA seq
DB search
MNPYGVPPGMALPPMMPNIPPGYVAGDQHSHYQHFNIPLPSEYSQGSNFLTEEELKEKSK
KWQQLQSKRYSDRKKFGFVETQKEDMPPEHLRKIIRDHGDMTSKKYRHDKRVYLGALKYV
PHAVLKLLENMPMPWEQIREVNVLYHITGAITFVNEIPLVVEPIFIAQWGSMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYSDNIIEVEPLEAIQIDLDPEEDGQVYEWFYDHKPLVD
TKHVNGTSYRKWNLTLPQMATLYRLANQLLTDLVDDNYFYLFDLKSFFTAKALNMAIPGG
PKFEPLVKDINPADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNLPHFVYLSWYHTPS
VVFIKTEDPDLPAFYFDPLINPIAHSKADRSFEPLPEDNDDDEEGFTLPDYVEPLLASRP
LYTDNTANGISLLWAPRPYNLRSGRARRALDVPLVASWYREHCPPGMPVKVRVSYQKLLK
YFVLNALHHRRPKPQKKRYLFRSFKSTKFFQSTTIDWVEAGLQVCRQGYNMLNLLIHRKN
LNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDSHVQYRLNNVDAF
QLADGIQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAP
GWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHD
IIDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVKMKADWWTN
TAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYVSAEEAVAIYTT
TVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYD
NPHEALSRIKRHLLTQRAFREVSIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEADK
RHLFPSWIKPGDSEPPPLLVYKWCQGVNNLQDVWDTSEQECNVMLETRFEKMYEKIDLTL
LNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFSSFIVQYYGLVLDLLV
LGLQRSSEMAGPPQMPNDFLTYQDVATEISHPIRLYSRYIDRFHVFFRFTAEEARDLIQR
YLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIDWDS
SFVSVYSKDNPNLLFNMSGFECRILPKCRMALEEFIHKDGVWNLQNEVTKERTAQCFLRV
DDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYYREAVVNTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITH
FRSGMSHDEDQVIPNLYRYIQPWETEFIDSQRVWAEYALKRQEALAQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSRPSLLADTKDVM
DGNTTQKYWIDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIVIDLAYNLH
SAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKR
LGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNERTKV
ILKPDKTTITEPHHIWPSLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIIL
GMEISAPSAQRQQIAEIEKQTKEQSQLTAVTTRTVNKHGDEIITSTTSNYESQSFASKTE
WRIRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNILKKFIIISDLRTQIAGYIYGVS
PADNPQVKEIRCIVMPPQLGTHQVVHLPSHLPSHEYLSELEPLGWIHTQPNELPQLSPQD
VTCHAKIMADNTSWDADKTIIITCSFTPGSCSLTAYKLTPGGFEWGRQNTDRGNNPKGYL
PSHYEKVQMLLSDRFLGFYMVPAQGSWNYNFTGVRHDASMKYDLQLANPKEFYHEIHRTG
HFTNFATIDESDYVGADREDVFS
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgaatccctacggcgtgccacctggcatggcactgccaccaatgatgcccaatattcct
cccggatacgttgctggtgatcaacactcgcactatcaacatttcaacattcccttgcct
agcgagtacagccaaggcagcaactttctaaccgaagaagagctgaaggaaaagtcaaag
aaatggcagcaacttcaatcgaaacgctattcagacagaaaaaagtttgggttcgtcgaa
acccaaaaggaagacatgcctccagagcacctaagaaagatcattcgtgaccacggtgat
atgacttcaaaaaagtaccgacatgataagcgtgtttacctgggtgctttgaagtacgtt
cctcatgccgtcctgaagctgctggaaaacatgccgatgccctgggagcaaattcgtgaa
gtgaatgtcctgtatcacattaccggcgccatcacatttgtcaatgaaattccactggtc
gttgagccgatattcattgctcagtggggctccatgtggattatgatgcgtcgagaaaag
cgagatcgtcgtcactttaaacgaatgcgttttcctccttttgacgacgaagagccaccg
ctagactactcggacaatattattgaagtcgagccgcttgaagctattcaaatcgatctt
gatccggaagaagatggacaagtttacgagtggttttacgatcacaagccactagtggat
acgaagcacgtcaacggcacttcttatcgcaaatggaacctcacccttccacagatggcc
actctgtaccgacttgccaaccagcttctcactgacttggttgatgacaattacttttat
ctctttgacttaaaatcattcttcaccgcaaaagctctaaatatggccattccaggtgga
cctaaatttgagccgcttgtcaaagacatcaaccccgctgatgaggactggaatgaattt
aatgacatcaacaaaattatcattcgtcagccgattcgtactgaataccgcattgcgttt
ccctatctatacaacaacttgcctcattttgtctacctttcatggtaccacacaccgagc
gtcgtctttatcaaaacagaagaccccgatttgccggctttttattttgatcctctaatc
aacccgatcgcccacagcaaagcagatcgttcgtttgagcctttgcctgaagataatgat
gacgacgaagaaggcttcactttgccagactacgttgaacctttgcttgcctcacgccca
ctgtacaccgataacactgcaaacggcatttcacttttgtgggcacccaggccttacaat
cttcgctctggtcgtgctcgtcgagcacttgatgttccactggtggccagctggtaccgc
gagcattgcccgcctggaatgcccgttaaagtgcgcgtttcctatcaaaaactactcaaa
tattttgtactcaacgctcttcatcatcgtcgacctaagcctcaaaagaagcgatacctg
ttccgttcgtttaaatcaacaaagtttttccagtcgacaactattgactgggtagaagca
ggactgcaggtgtgtcgtcaaggctacaatatgctgaacttgctgattcatcgaaagaac
ttgaattatttgcatttggattacaacttcaatcttaagccagtcaaaacgttgaccact
aaagagcgaaagaagtctcgtttcggaaacgcttttcacttgtgtcgtgaaattctccgc
cttaccaaactcatcgtcgacagtcacgttcagtatcgtctcaacaacgtggacgctttt
cagttggccgacggaattcagtacatctttgcgcacgttggtcagctcactgggatgtac
cgctacaagtacaagctgatgcgacaaattcgaatgtgcaaagacttgaagcatctcatc
tactatcgtttcaacaccggcccagttggcaagggacctggatgcggcttctgggctcct
ggttggcgtgtctggctctttttcatgcgcggcatcaccccactgctcgaacgctggctt
ggcaacttgctatctcgccagtttgaaggtcgccattcaaagggcgttgctaaaacggtg
accaaacagcgtgtcgagtctcactttgacctggaactccgcgcctctgtcatgcacgac
attattgacatgatgcctgagggaattaagcagaacaaagcgcgaactattctgcagcac
ctcagtgaagcatggcgttgctggaaggccaacatcccctggaaagtgcccggccttcct
attcctattgaaaacatgattttgcgttatgtgaaaatgaaggctgattggtggaccaac
actgcgcactacaatcgtgagcgaattcgacgtggtgccactgttgacaaaacggtttgc
aaaaagaacctcggtcgcctgactcgattgtacctgaaggccgaacaagaacgccagcac
aattacctgaaggatgggccttatgtgagcgctgaggaagctgtggccatctacactacc
accgtgcactggctggaaagtcgacgattttcacccattccctttcctccgctttcttac
aaacatgacaccaagctgctgattctcgctttggaacgccttaaagaggcctattccgtg
aagagtcgtttgaaccagtctcagcgtgaggaactcggcctgattgaacaggcctacgac
aacccacacgaggcactgtctcgaattaagcgacatcttctaacacaacgtgcttttcga
gaagtgagcattgaatttatggacctgtactcccacctgattcccgtctatgatgtcgag
ccgctggagaaaattactgatgcttaccttgatcagtacttgtggtatgaagcggacaag
cgccacctctttccatcgtggatcaaaccaggcgactctgagcctccgccgctgctagtt
tacaagtggtgccaaggggtcaacaatctgcaggatgtctgggataccagtgagcaggaa
tgcaatgtcatgctggagacacgatttgagaagatgtacgaaaagattgacttgacactt
cttaatcgactgctgcgcctaatcgtggaccacaacatcgctgactacatgacggctaaa
aacaacgtggtgatcaactacaaggacatgaatcacaccaactcttatggcattattcga
ggtttacagttttcctcgtttatcgtccagtactacggtctggtgcttgatctgctagtg
ctcggtctgcaacgatccagtgaaatggccggcccgccacagatgcccaacgactttttg
acgtaccaagatgtggccaccgaaatttcgcacccgattcgcctgtactcacgatacatt
gaccgctttcatgtcttcttccggttcactgctgaagaggcccgagacttaatccagcga
tacctcactgaacaccctgacccgaataatgagaacatcgttgggtacaacaacaaaaag
tgctggccccgcgatgctcgtatgcgcttgatgaagcatgacgtcaacttgggcagagcc
gtcttttgggacatcaaaaatcgcttgcctcgctctgtgaccactatcgattgggacagc
agcttcgtttccgtttacagcaaggataaccctaacttgcttttcaacatgtccggcttt
gagtgtcgcattctgcctaaatgccgaatggcacttgaagagtttattcacaaggacggc
gtttggaaccttcaaaatgaggtcactaaggagcgaactgcccaatgcttcttgcgcgtc
gacgatgaatcattgcagcgctttcacaaccgagttcgccaaattctcatggcctcaggc
tcaacaacgtttaccaaaattgtcaacaagtggaacactgcactgattggcctgatgact
tactaccgcgaggcagttgtcaacacacaggagttgcttgacttgcttgtcaagtgcgaa
aacaaaatccaaactcgaattaagattggcctcaactcaaagatgcccagtcgatttccg
cctgtcgtcttttacacacccaaagagttgggcggccttggaatgctgtcaatgggccac
gtgctcattcctcagtctgatttgcgttggtcaaagcaaaccgatgtcggcatcactcac
ttccgttctggcatgtcgcacgacgaggatcaggtcatccccaacttgtaccgatacatt
caaccctgggagactgagttcattgactcacagcgtgtctgggcggagtatgccttgaag
cggcaagaggcgctggcacaaaaccgacgtcttacactggaggatctcgaagacagctgg
gatcgtggcattccgcgaatcaacacgctcttccagaaggatcgccacacactggcctac
gacaagggctggcgagtgcgaacggacttcaagcagtaccaggttctgaagcagaatccc
ttctggtggactcaccaacgacatgacggcaaactgtggaacttgaacaactaccgaacc
gacatgattcaagcgcttggcggcgtggagggcattctcgagcacaccctcttcaagggt
acctatttccccacttgggagggtctcttttgggagaaggccagtggctttgaggagtcg
atgaagtacaaaaagctgaccaatgctcaacgctctggtctgaaccaaattcccaaccgt
cgattcacactttggtggtcgcccacaatcaaccgcgccaatgtctacgtcggctttcag
gtgcaactcgacctaacgggcatcttcatgcacggcaaaattcctacgctgaaaatttca
ctaattcagattttccgtgcccatctgtggcagaagattcacgagagtgtcgtcatggat
ttgtgtcaggtttttgaccaggagctggacgctcttgagattgaaacagtccagaaggag
actattcaccctcgtaaatcgtacaaaatgaacagctcttgtgccgatattctgctcttt
gccgcctacaagtggaacgtgtctcgcccatcgctgttggccgacaccaaggacgtcatg
gacggcaacactactcaaaagtactggattgatgtccagctacgatggggcgactacgac
tctcacgacgtggagcgatatgctcgtgccaaatttctcgactacaccaccgacaacatg
agcatctacccttccccgaccggcgttctcattgtcattgacctggcttacaacttgcac
tctgcctacggcaactggttccccggctccaaaccgctcattcagcaggcaatggccaag
atcatgaaggccaatccggcattgtacgtgctccgagagcgaattcgcaaaggtctacag
ctgtactcttctgagccaactgagccgtacctgtcttcccagaattacggtgaactcttt
tcgaaccagatcatctggtttgtggacgatactaacgtgtatcgtgtaaccatccacaag
acatttgaaggcaacttgacaacaaagcccattaacggagccatcttcatctttaacccg
cgaaccggacagctcttcctcaaaatcattcataccagcgtctgggccggccagaagcgt
cttggtcagttggccaagtggaaaaccgccgaagaagttgccgctctcattcgctcgctt
ccagttgaggagcaaccgaagcagattatcgtcacacgaaagggaatgttggatcctctc
gaggttcatttgctcgactttccgaatatcgtcatcaagggcagtgagctgcaactgccc
ttccaggcctgcttgaaagtggaaaagtttggtgatttgattctcaaagcaaccgagcct
cagatggtccttttcaacttgtacgatgactggctaaagaccatttcttcgtacactgct
ttctctcgtttgattctcattctgcgcgccctgcacgtgaataatgaacgtacgaaggtc
attctcaagccagataagaccaccatcactgagccacatcacatttggcccagtttgact
gacgaggaatggatcaaggtggaagttcagctgaaggatctcatcctggctgactatggc
aaaaagaacaatgtcaacgtcgcctctctgacacagtcagaaattcgtgacattattctg
ggaatggaaatttccgccccgtctgctcagcgccagcagattgccgaaattgaaaagcaa
actaaggaacagtcccaactgactgccgtcacaacgcgcacagtcaacaaacatggcgat
gaaataatcacctcgacgactagtaactacgagtcgcagtcatttgccagtaaaactgag
tggcgaatccgtgccatctctgcaacgaatctgcacctgcgaaccaatcacatctacgtg
tcatcggacgacatcaaggagactggctacacgtacattttgccgaagaacattcttaaa
aagttcatcatcatctctgaccttcgaacacaaattgccggctacatctacggcgttagt
cctgctgataatccgcaagtgaaggagattcggtgcattgtgatgccgccgcagttgggc
acccatcaggtcgttcacttgccctctcatctgccttcgcatgagtatctttccgaattg
gagccccttggttggattcacactcagcccaatgaactgccgcagttgtcaccgcaagac
gtcacatgtcatgcgaagattatggcagacaacacttcttgggatgctgataaaacgatc
atcatcacgtgctctttcacgccgggctcgtgctcgctgaccgcctacaagctgactccc
ggcggcttcgagtggggacgccagaacaccgatcgcggcaacaatcccaaaggatatttg
ccttctcactatgaaaaggtccagatgcttttgtctgatcggttccttggattttatatg
gtgccagctcaaggatcatggaactacaactttacaggcgttcgtcacgatgcctcaatg
aagtacgatctgcagttggccaatccgaaggagttttaccatgaaattcaccgaacggga
cactttaccaactttgccaccattgacgaatctgactatgttggtgccgaccgcgaagac
gtcttttcttga
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integrated database retrieval system
