Rhagoletis zephyria (snowberry fruit fly): 108371318
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Entry
108371318 CDS
T08513
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03015
mRNA surveillance pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108371318
09122 Translation
03013 Nucleocytoplasmic transport
108371318
03015 mRNA surveillance pathway
108371318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108371318
03041 Spliceosome [BR:
rze03041
]
108371318
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108371318
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108371318
Spliceosome [BR:
rze03041
]
Complex C
Other components
EJC/TREX
108371318
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108371318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
108371318
NCBI-ProteinID:
XP_017482350
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MADNEQDLLDYEEDEEQTTISGDLAVANQNNGAGNDTAKKAGYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIDPVDNQVSV
LVMCHTRELAFQISKEYERFSKYMPSIRVSVFFGGMNITNDEKVLRMNPPHIVVGTPGRI
LALIRSKKLNLKNIKHFILDECDKMLEQLDMRRDVQEIFKSTPHEKQVMMFSATLSKEIR
PVCKKFMQDPMEVSVDETKLTLHGLQQYYVKLKDAEKNRKLFQILDDLEFNQVVIFVKSV
QRCVALANLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVN
IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNSVQDRFDVSIPEMPAD
IDVSTYCKFLHIEPFS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaatgagcaagatcttctcgactatgaagaggatgaggagcaaacgaccatc
agcggcgacctggccgtcgccaaccaaaacaatggagccggcaacgacacggccaaaaag
gccggctacgtttccattcattcgagtggattccgcgattttctactcaagcccgagctg
ctaagagccattgtcgactgcggatttgagcaccctagcgaggtccaacacgagtgtatt
cctcaggccattttgggcatggacattttgtgccaggccaagtctggcatgggcaagacg
gccgtttttgttcttgccactttgcagcagattgatccagtggacaaccaggtttcggtt
ctcgtcatgtgtcacacacgagagcttgcgtttcaaatctccaaagagtatgaacgcttt
agcaagtacatgcccagcattcgcgtttccgtctttttcggcggcatgaacattaccaac
gatgaaaaagtcctacgcatgaacccgccccatatcgtcgtcggaacaccaggtcgaatt
ctcgcactgattcgcagcaaaaaactcaatctcaagaatatcaagcactttattttggat
gagtgcgacaagatgcttgagcagctagacatgcgacgagacgttcaggagattttcaaa
tcaactcctcatgagaagcaagtcatgatgtttagtgctacgctatccaaagagattcga
cccgtgtgcaaaaagtttatgcaagatccaatggaagtgtcagtcgacgaaaccaaactt
accctgcacggcttgcagcagtactatgtcaagctcaaggacgccgaaaagaatcgcaag
ctctttcaaattttggacgatctcgagtttaatcaggtggtcatttttgtcaagagtgtc
cagcgttgcgtcgctctcgccaacctgcttgtggaacaaaactttcccgccattgccatc
caccgcgccatgacccaggaagaaagactttcgcgctaccagcagtttaaggactttcag
aagcgtattctggtggcgaccaacctttttggccgaggcatggacattgaacgagtcaac
attgtctttaactacgacatgcccgaagacagcgacacctacctccaccgtgtcgctcgt
gctggccgttttggaaccaaaggtctggccattacctttgtcagcgatgaaacggacgcc
aaggtgctcaacagcgtccaggatcgttttgatgtgagcattccagaaatgccagccgac
attgatgtctcgacttattgtaagtttttacatattgaacccttttcttag
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