Rhagoletis zephyria (snowberry fruit fly): 108371475
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Entry
108371475 CDS
T08513
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108371475
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
108371475
NCBI-ProteinID:
XP_017482534
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MSPQQRGSAYASRLYNKSNNNRNINALIAFCCLVLLSSCALLTQAQRLTGRRDRPLNTPR
EYKKTHPCERSSCYPATGNLLIGRENRLTASSTCGIHAPERFCILSHLQDKKCFLCDTRE
ETRNDPYKNHRIGQIIYKTKPGTNLPTWWQSENGKENVTIQLDLEAEFHFTHLIISFTTF
RPAAMLIERSFDFGQTWHVYRYFAYDCAESFPGVPTVLRNITDVMCTSRYSNVEPSRNGE
VIFRVLPPNINVSDPYATHVQNMLKMTNLRINFTKLHKLGDNLLDNRLEMEEKYYYGISN
MVVRGSCSCYGHASQCLPLDGTESPEYDMVHGRCQCTHNTKGLNCETCEDFFNDLPWKPA
FGKQTNACKKCECNDHAVSCHFDENVFEQSGRISGGVCDNCMHNTQGQHCEECMPFFYRD
PEQDIRSPEVCKPCNCDLNGSVDEGICDSVNDPENGIEAGACHCKSNVKGRRCDVCKDGF
WNLIPENPAGCEQCTCNTLGTIDNSGCNMYTGECTCKRLVTGKDCNQCAPQTYGLSESED
GCTHCGCDVGGSYDNFCDVITGQCRCRPHMTGRNCSQPKQNYFIPPLYVVHDVETADVCI
SRGNNGNCTVVPYPPLPDRTPDYTGVGFTRAPENSEFIITVDDIPSSMPYDVVIRYQTTS
RDDWEDAYITLVRLDEVDPEGVCAQAVQPGSSVYETHIPFSLPERDRQVVALRNVCLEAN
KVYKFKIHFERRRHNEDNPTATILIDSLTLIPRIEVTSVFSGSPAADLRRREYIQMGCNQ
SLYDIRYSSVVDPRCNELADYASTEIHDGASQCNCNPTGALSKECDPHGGFCQCKPNVVG
RQCDQCAPGTYGFGPEGCKACDCNSIGSKDNNCDLITGQCACHPNTYGRECDQCQPGYWN
FPNCQACECNGHAQQCDARTGQCINCLDFTSGYACDSCLEGYYGNPFLGSEIGCRACRCP
DTVASGNTHADGCSLDARNNNMICHCKEGYDGARCEVCADNYFGDAETPGGACEKCDCSN
NIDLYDTGNCERRTGQCLKCMYDTTGDHCELCRDGFFGDALQQNCVPCDCDYLGTNQTIA
HCDRFTGQCPCLPNVHGIRCDECAANHWKIASGEGCEACECDPIGSSSEQCNRYTGQCEC
KDGFGGRACNQCQANYWGNPNRECQPCECDPYGSADYQCDRETGQCVCHEGMGGYKCNEC
ARGYQGRFPHCAPCGECFNNWDLILHGLEDATAEAIQRAKDIKLIGATGAYTAEFSTLDK
KLQNIRDLLQNTTVSLQDIDALDKEGAELKEKLQASHTKLVDTEDNLENIYSSLSLSTVE
LEALRNQSELVKKLSKELKENGIQLQESNIEGALNLTRNAFERVLDLSSVKNEAEDYAAN
TERNCKRVETLANKIKDEHDTITANDGIIADYRSELTSLTAMIPGLNNEVCDKSGDPCDS
LCGGAGCGSCGGLSCEQGALTRTEKALKVAKDTEQIIKDKKDAADQTIRSLFQAKVNASE
GYLKAKSAFEDAERYLNRTNDKIKKGEAMIEQLGSFLNNNTALPTESRDLAQQTLKLDLK
LDPEEIQMLGGKINDAVSSLKNVELIIYNTRGDLARVNNLQAKANTTKETANEILDTANS
VVKNLDDADASQLKAKDAISQANVNIELAAKDLDQIDLETSDAEAPANATAQQVEDLAKQ
ASRISKNLLKNELDAQEIKKEANAVKEAALKAREYSNQLHSATNLVNQTLSDRARNSESA
RERAKQLLQRASKLTVDTNDKLAQLQLMQEIYAEKNSTLQKLQDDLKPLNEELTLSLQKI
QEHADRYRQCTG
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcaacaacgcggcagcgcctatgctagccgcctctacaacaagagcaacaac
aacagaaacatcaacgcgcttatcgccttttgctgcttggtactgctgagtagctgtgcg
ttgctgacacaggcgcaacgcctcactggacgacgcgatcggccactaaatacgcccaga
gagtacaagaagacacatccatgcgaacgctcctcctgctatccggccacgggtaattta
ctcatcggacgtgagaatcgcttgaccgcctcatcgacgtgcggcatacatgcgccagaa
cgtttctgtatattgtcgcatttgcaggataaaaagtgtttcctttgcgatacgcgcgaa
gagacgcgcaatgatccctacaagaatcatcgcattggacaaattatctataaaacgaaa
ccgggtacgaatttgcccacttggtggcaatcggagaatggcaaggagaatgtgaccata
caattggatttggaggcggagtttcatttcacccatttgatcatctcgttcaccacattt
cggccggcggccatgttgattgagcgttcatttgattttggtcaaacttggcatgtctat
cgctacttcgcttacgattgtgccgaatcgttccccggcgtaccgactgtgttgcgcaat
atcaccgatgttatgtgtacgtcgcgttattcgaatgtggagccctcgcgcaacggtgag
gtcatctttcgtgtgctgccgccgaacattaacgtctccgatccgtatgccacgcatgtg
caaaatatgctaaagatgaccaatctgcgtattaatttcacgaagttgcacaaattgggt
gacaatttgttggataatcgattggagatggaggagaaatattactatggcattagcaat
atggttgtgcgcggctcgtgctcttgctatggccacgcctcacaatgtctgccactggac
ggcactgagtcgccggaatacgatatggtgcatggacgctgccagtgtacgcacaacacc
aagggtttgaattgcgaaacttgcgaggacttcttcaacgatctgccctggaagccggcg
ttcggcaagcagactaatgcctgcaagaagtgcgagtgtaacgatcacgctgtgagctgt
cacttcgatgagaatgtcttcgagcaatccggccgcatttcgggtggtgtgtgcgacaat
tgcatgcacaatacacagggtcagcactgcgaggagtgtatgcctttcttctatcgcgat
cccgagcaggacatacgcagcccggaggtgtgcaagccttgcaattgcgatttgaatggt
tcggtggatgaaggcatttgcgattcagtgaacgatcccgaaaatggcatcgaggctggc
gcttgtcactgcaagtcgaatgtgaagggacgccgttgcgatgtgtgcaaggatggattc
tggaatttgatacccgaaaacccagctggttgtgaacaatgcacgtgcaacacgctcggc
accatcgacaattcgggctgcaacatgtacaccggtgagtgtacttgtaagcgcttggtt
accggcaaggactgcaatcaatgcgcgccacaaacgtatggtctctctgagtcggaggat
ggctgcacgcactgcggttgcgatgttggcggctcatacgacaacttctgcgacgttata
acgggtcagtgtcgctgtcgcccgcacatgactggacgcaattgctctcagccgaaacag
aattacttcataccaccgctctatgtggtgcacgatgtagagaccgcggatgtgtgcata
tctcgcggcaataacggcaattgcactgttgtgccatatccaccactgcccgaccgcaca
cccgactacactggtgttggattcacgcgtgcgccggaaaattccgaattcattataacc
gtcgatgacataccaagctccatgccgtacgatgtggtgatacgctaccaaaccacttcg
cgcgacgactgggaggatgcttacataacgcttgtgcgtttggacgaagtagacccggag
ggagtgtgcgcacaggctgtgcaacccggttcgagtgtgtacgagacgcatatacccttc
agtttgcccgaacgtgaccgtcaggtagtggcgctgcgcaatgtttgcctggaagccaat
aaggtatacaagttcaagatacattttgaacgccgacgacacaacgaagacaatcccacc
gccaccattctgatcgactcactaacgcttataccacgcatcgaagttacttccgtcttc
tcgggctcgcccgctgcggacttgcgtcgccgcgaatacatacaaatgggctgcaatcag
tcgctttatgacatacgctacagcagtgtcgtggacccacgttgcaatgagttggcggac
tatgcaagcacggaaattcacgatggtgccagccagtgtaactgcaaccctacaggcgcg
cttagtaaggaatgtgacccacatggtggcttctgccaatgtaaaccgaatgtggtggga
cgtcagtgtgatcagtgcgcgccaggcacttatggcttcggcccggaaggctgtaaggct
tgcgactgcaacagcattggttcgaaggataacaactgtgatctgatcacgggtcagtgc
gcctgtcatcctaacacatacggacgtgagtgcgatcagtgccagccgggctattggaac
ttccccaactgtcaggcgtgcgagtgtaatggacatgcgcagcaatgtgacgcacgcact
ggtcaatgtatcaactgtttggacttcaccagcggctatgcgtgtgacagctgcttggaa
ggctactacggtaatccctttttgggtagtgaaatcggttgtcgcgcttgtcgctgcccc
gacactgtggccagcggtaatacacatgccgacggctgctcgttggatgcgcgcaacaac
aatatgatctgtcactgcaaggagggctacgatggtgcacgttgtgaggtgtgcgcagac
aactacttcggtgatgccgagacgccaggtggcgcgtgcgaaaaatgcgactgcagcaac
aacatcgatctctacgacacaggcaattgcgaacgacgcacaggacagtgcttgaagtgt
atgtatgatacgaccggtgatcattgcgagctttgtcgcgatggcttctttggcgatgcg
ctgcaacaaaattgcgtgccatgtgattgcgattacttgggcactaaccagacaattgcg
cattgcgaccggttcaccggtcaatgtccctgcttacccaacgtacatggcatacgttgc
gatgaatgtgcggccaatcattggaagatcgcttcaggcgaaggctgtgaggcgtgcgaa
tgtgacccgattggttcatcgtccgaacaatgtaaccgttacaccgggcagtgtgagtgc
aaagatggcttcggtggacgcgcgtgtaatcaatgtcaagccaattactggggcaatccg
aatagggagtgccagccttgcgagtgtgatccctacgggtcggctgactaccagtgcgat
cgcgagacgggacagtgcgtgtgccacgaaggtatgggcggctacaagtgcaatgaatgt
gcgcgcggttatcaaggacgcttcccacattgtgcgccttgtggtgaatgcttcaacaat
tgggatttgatactgcacggactggaagatgccacggccgaggccatacaacgcgccaag
gatatcaaattgattggcgcaaccggcgcatatacggcggaatttagtactttggacaag
aaactgcaaaatatacgcgatctgctgcagaacaccaccgttagcttgcaggacatcgac
gcgttggataaggaaggcgctgagctgaaggagaaactgcaggcttcgcataccaaatta
gtggacactgaagacaatttggagaatatttattcttcgttgagtctgtccactgtggag
ttggaagctttgcgtaatcaatctgagctcgtaaagaaattgtcaaaagagctgaaagag
aatggcatacagctgcaagagtccaacatcgaaggtgcactcaatttgacgcgtaacgcc
tttgagcgtgtgctcgacctgtcttcagttaagaatgaggccgaggattatgctgccaac
accgagcgcaactgcaagcgcgtcgaaacgctggcaaacaagatcaaggatgagcacgac
acgatcacggccaacgatggcatcattgctgactaccgcagtgagctgacgtcccttacc
gctatgatacccggcttgaataacgaagtgtgcgacaagagcggcgatccatgcgactcg
ttgtgtggcggtgctggttgtggctcctgtggtgggctatcttgcgagcaaggcgcattg
acacgcaccgagaaggcgctcaaagtggccaaagacactgagcaaataatcaaagacaag
aaagatgccgccgatcaaactatacgttcgctcttccaggccaaagtcaacgcctccgag
ggttatctgaaggccaagagcgctttcgaagatgccgaacgttacctcaaccgcaccaat
gacaaaattaagaagggcgaggcgatgattgaacagctcggcagcttccttaacaataac
actgcattgccgacggagagtcgtgacctagcccagcaaacactcaagctcgacctcaaa
ttagatcccgaagagatacaaatgctgggtggcaaaatcaatgacgctgtttcttcactc
aaaaacgttgaattgattatttataatacgcgtggcgatctggcgcgcgtcaacaatctg
caggcaaaagcgaatacgaccaaagaaacagcaaacgaaatactagatactgccaattcg
gtggtgaagaatctggacgatgcagatgcttcgcaactgaaggccaaagatgccatatca
caagctaatgtcaatattgaactggcggccaaggatttggatcaaatcgatttagagacg
agtgatgctgaggcgcctgccaatgccactgcacagcaagtggaggatctggccaagcaa
gccagtcgcataagcaagaatttgctgaagaacgaattagatgcacaggaaatcaagaag
gaagcaaatgccgtaaaggaggccgcactcaaggcgcgcgaatactccaatcaattgcac
tccgccaccaatttggtcaatcaaacgcttagcgatcgcgcgcgtaattcggaaagtgca
cgcgaacgtgccaagcagctattgcaacgcgcttccaaactgacagtggacacaaacgat
aagttggcccaactgcagctgatgcaagagatatacgcggaaaagaatagcactttgcaa
aaactgcaagacgatttgaagcctttaaacgaagagctgactttgtcgctgcaaaagata
caggagcacgccgatcgctatcgacaatgtacgggctaa
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integrated database retrieval system
