Rhagoletis zephyria (snowberry fruit fly): 108371854
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Entry
108371854 CDS
T08513
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108371854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108371854
03041 Spliceosome [BR:
rze03041
]
108371854
03009 Ribosome biogenesis [BR:
rze03009
]
108371854
03016 Transfer RNA biogenesis [BR:
rze03016
]
108371854
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108371854
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108371854
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108371854
Complex C
U4/U6.U5 tri-SnRNP related factors
108371854
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
Helicases
108371854
Transfer RNA biogenesis [BR:
rze03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108371854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
E1-E2_ATPase
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Cation_ATPase
ResIII
Hydrolase
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
108371854
NCBI-ProteinID:
XP_017482950
LinkDB
All DBs
Position
Unknown
AA seq
1563 aa
AA seq
DB search
MLECDAVLMTGSCIVDESMLTGESVPTPKVALVEDSSSFYSPALHKSNTLFSGTRVLTVQ
GAKESQGKVKAVVVRTGFATAKGELARSILFPLTANNNLKKQLIKMSAIFFVIGIPCMAY
TVYALSRFKYASHDIFIIVLDVATFLIPPVLPAVLTSINVHAQRRLKTKDIYCLNPRMIS
CSGEVDVMCFDKTGTLTDDTIEFAGVVPVSDGHFEEMQTDLEQSNIDDHAIVRSMAACNS
LVEYEDKVEGDDLDLKLFTVTGWKFTADYDAALFEKAPERVVTSGSGAHTVAIMKQFPFE
SFLQRMLVIVRDTQRSSNVAIVKGAPEIVASFCTSESIPKDFLEVFESYTRRGFRVLATA
IKVIPDDGVDMSRSEIECQMEFVGLFLFKNKLKEATFDVLQELRRANIRCIMATGDSLLT
GISVAEECQLVDKSDAIIRVRAHLDKSSKKVQVQYSYIKYPDFVLKNDNNANFEQASGGH
FRYHFAIEGDSFNTIRAADSQLIERIVHKGTIFARMSPDQKLSLVNLLQKQNHNVGMCGD
AMDLFDVFNLDSTAKKRKANDIEEDDVEAAVHEKVDDNLIDQLMSDAKKQKSDDSAVSIV
EPSADQSQNDLENFAGNLESFIPRAKKCQIETKGSAVHEVIIPDDLEYVPLRDNSDNPNY
KPVKEYKFVLDSFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLQNKQRVIYTTP
IKALSNQKYREFQEEFDDVGLITGDVTINPTASCLIMTTEILRLMLFRGSEVMREVGWVI
FDEIHYMRDRERGVIWEETIILLPDTVHYVFLSATLPNACQFAEWIAHLHHQACHVVYTD
YRPVPLNHYIYPAGGEGMHLVLDEKNNFREDNFNLAMNVLQNAGDKAKGDMNNRGRKGGM
KDDSNILKVIRTIMERSLAPVIVFSFSRKECEAYALQISKLEFNSPEEKALVEEVFNNAI
EVLSDEDKKLPQVQQILPLLKRGVGIHHSGLLPLIKETIEILFGEGLIKTLFATETFAMG
LNMPARTVVFTNARKFDGTDFRWLTSGEYIQMSGRAGRRGLDERGIVILMIDEKMSPAVG
KELVRGKPDPINSAFHLTYNMVLNLLRVEEVNPEYMLEHSFFQFQHYLEYPKLNEKYNEF
KKELEEINVDDEKNISDYIKIKNQLLRSEKEFQAFLTNPRYILGFLNSGRLLKISSNDNI
DMDWGVCVNFKKINKRDQDPVYTVDVLLLVDKKIDPSSEALLPPSANDKGEMKVATLALK
NITQVSSARVFLPNDLRPMDNRQSVLKSINEVKKRFGKVPLLDPLEDMKIKDTDFLNLVK
NIEKCEKRLQEFKNIDPQSAEKYEKKLKLEEEMANLKIQMKKTRSLLQMDELKCRKRVLR
RLGYCTSADVIEIKGRVACEISSGDELLLTEMLFQGAFNELNVYQIAALLSCFVFEEKTQ
QQPKLTEELSKPLKTMQELAKKIATVSKETKLEIDEQTYVEKFRPSLMDVIYAWAKGQPF
GEICKMTDAFEGSIIRCMRRLEELLRQMCQASKVIGNTDLENKFSEAIKLIKRDIVFAAS
LYL
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagtgtgatgccgtcctcatgacaggctcgtgcattgtcgacgagagcatgctc
accggcgagtcggtgcccacgcccaaagtggccctggtcgaggactccagctccttctac
tcaccggcactgcacaaaagcaacacgctcttctcgggaactcgagtgctgacggtgcag
ggcgccaaggagagccagggaaaggtgaaggcagtggtggtgcgcactgggttcgccact
gcaaagggcgaactggctcgaagtattctctttccactaacggcgaacaacaacttgaag
aaacagctaattaaaatgtccgccatcttctttgtcattggcattccttgcatggcctac
acagtgtacgccctgtctcgctttaagtacgccagtcatgacatcttcatcatcgtcctc
gatgtggccacttttctcattccaccggtgctgccagctgtgctgactagcataaatgtg
cacgctcagaggcggctaaagacaaaggacatctactgtctcaatcctcgaatgatcagc
tgttcaggagaggttgatgtgatgtgcttcgacaagacgggtacacttaccgacgacaca
atcgaatttgctggtgtcgttccagtcagtgatggtcactttgaggagatgcagactgac
ctcgagcagtccaatattgacgaccacgcgatagtgcgctcaatggcagcctgtaactcg
ctggtcgagtatgaagacaaggtcgagggtgatgacctcgacttgaagctatttacagtc
actgggtggaaatttacggccgattatgatgcagctctttttgagaaggcccctgaacgc
gtggtgaccagtggaagtggcgctcatacagtggccatcatgaagcagtttccattcgag
tcttttttgcagcgaatgttggtcattgttcgagacacacagaggtcctctaatgtggcc
atcgtcaaaggggcaccggaaatagttgcctccttttgtacttcggaaagcattccaaaa
gactttttagaagtctttgaatcgtacactcgtcgtggctttcgagtgctcgccactgca
atcaaggtgattcctgatgatggcgtggacatgagtcgaagtgaaatcgagtgccagatg
gaattcgtcggactgtttcttttcaagaacaaactcaaagaggcaacctttgatgtgctg
caggagcttcgcagggcaaacatcagatgcatcatggcaacgggcgacagtcttctcact
ggcatcagtgtcgccgaggagtgtcaactggtggacaaatcagacgccatcatcagagtg
cgagcccacctggacaagtcgtcgaaaaaggtgcaggtgcagtacagctacatcaagtac
cccgactttgtgctgaagaacgacaacaatgccaactttgagcaggccagtggtggtcat
ttcaggtaccactttgccattgagggcgactcctttaacaccatccgcgcggctgattca
cagctgatcgagcggatagtccacaagggcaccatctttgcgagaatgtctcctgaccaa
aagctgagtctagtgaatctgctgcagaagcagaatcacaacgtgggcatgtgtggtgat
gcaatggatctttttgacgtctttaatttagactctacagcgaaaaaacgtaaagctaat
gacattgaagaggatgacgttgaagcagctgttcatgagaaagttgacgacaatctcatt
gaccagcttatgagcgatgccaagaaacagaaaagcgacgattctgctgtttccattgtt
gaaccaagtgccgatcaatcacagaatgaccttgaaaattttgcaggaaacttggaaagt
tttattccacgagccaaaaagtgtcaaatcgaaactaaaggctccgctgttcacgaagta
attattcccgatgatttagaatatgttccccttcgcgacaatagcgataatccgaattac
aaaccggttaaagaatacaagtttgttttggattcttttcaaaaggaagccatcttatgc
attgaaaataatcaaagtgttttggtttcagcgcacacttctgccggtaaaaccgtggtt
gccgagtacgctattgcttcttcgctgcagaataagcaacgggttatctacacaacacca
atcaaagcactaagcaaccagaaataccgagaattccaagaagagttcgatgatgtcggt
ctgattactggagacgtgaccattaaccctactgcatcgtgccttatcatgactactgaa
attttgcgtttgatgcttttccgcggcagtgaggtgatgcgtgaagttggctgggtcatt
tttgatgagattcactacatgcgagacagagagcgcggtgtcatttgggaggaaaccatc
atcctccttccagacacagtgcactacgtctttctctctgcaacccttccgaatgcctgc
cagtttgctgaatggatcgcccaccttcaccaccaggcgtgtcacgtggtctacactgat
taccgacccgtccctctgaatcattacatctacccggccggtggagagggcatgcacttg
gtgctagatgaaaagaacaactttcgagaggacaactttaatctggccatgaatgttctg
caaaacgccggcgataaagccaaaggtgatatgaacaatcgtggtcgcaaaggtggaatg
aaagatgattcaaatattctcaaggtcatccgaaccatcatggagcgcagccttgctccg
gtcatcgtttttagctttagccgtaaggaatgtgaagcttatgcacttcaaattagcaag
cttgaatttaattctcctgaagagaaagcactcgttgaagaggttttcaacaatgcaatt
gaagtgctgagtgacgaagacaagaaattgccccaagttcagcaaattttaccactgctc
aaacgaggtgtcggaattcaccacagcggtcttctgccattgattaaggagaccattgaa
attctgttcggtgaaggcttaatcaaaactctctttgctactgaaacctttgccatgggt
ctcaacatgccagcgcgaacggtagtctttaccaatgcgcgaaagtttgacggcaccgac
tttcggtggctcacctcgggcgagtacattcaaatgagtggccgcgctggtcgccgaggc
ctcgatgagcgtggtattgtcattctcatgattgatgaaaaaatgagcccagcggtgggc
aaggagctggtccgtggtaaaccagatccaatcaactctgcatttcatctcacctacaac
atggttctcaacctccttcgcgttgaagaggtcaatcccgagtatatgctggagcacagc
ttttttcaatttcaacattaccttgaatatcctaaactcaatgaaaagtacaatgagttc
aagaaagaactcgaggaaattaacgttgatgatgaaaagaacatttccgattacattaaa
attaaaaatcagctactacgatctgaaaaggagtttcaagcttttctcaccaatcctcga
tacattttgggatttctcaactctggccgacttctaaaaatttcatccaacgacaacatc
gacatggactggggcgtttgtgtgaacttcaagaagataaataaacgagatcaagatcct
gtttacactgttgacgtgcttttacttgtggacaaaaagatcgatccatcaagtgaagct
ctgctgccgccttctgcaaatgacaaaggcgaaatgaaagtcgctacgctggcgctaaag
aacattacccaagtgagttcggcgcgtgtttttcttccaaacgacctgaggccgatggat
aatcgacagtcagtgctcaagtcgattaacgaagttaagaaacgctttggcaaagtgcca
cttttggatcctctggaagatatgaaaattaaagatacggactttctcaatttagtaaag
aatattgaaaaatgcgagaaacgacttcaggagtttaagaatatcgaccctcaaagtgct
gaaaagtacgagaaaaagctaaaacttgaggaagaaatggccaatttgaagattcagatg
aaaaagactcgcagtctgctgcagatggacgaactcaagtgtcgaaagcgtgtgcttcgt
cgacttggctactgtacttcggcggatgttatcgaaatcaaaggccgtgtggcttgcgaa
atttccagtggtgatgaactcctactcaccgaaatgctttttcaaggcgctttcaacgag
ttgaatgtctaccaaattgctgcccttctcagctgttttgtttttgaggagaaaacacaa
caacagcccaaattaaccgaggagctttcaaagccactaaaaacaatgcaagagcttgcc
aagaagattgccaccgtttcaaaggagaccaagttggagatagatgagcaaacctatgtg
gaaaagtttcgacccagtttaatggatgtcatctacgcctgggcaaagggccagccattt
ggtgaaatatgcaaaatgaccgacgcttttgagggctccatcattcgttgcatgcggcgt
ctggaggagttgcttcggcagatgtgtcaggcgtctaaagttattggcaacactgatctg
gaaaacaaattctctgaagccatcaaacttatcaagcgagacatcgtttttgctgcaagt
ctttatctataa
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integrated database retrieval system
