Rhagoletis zephyria (snowberry fruit fly): 108373112
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Entry
108373112 CDS
T08513
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03030
DNA replication
rze03410
Base excision repair
rze03420
Nucleotide excision repair
rze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108373112
03410 Base excision repair
108373112
03420 Nucleotide excision repair
108373112
03430 Mismatch repair
108373112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rze03032
]
108373112
03400 DNA repair and recombination proteins [BR:
rze03400
]
108373112
DNA replication proteins [BR:
rze03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108373112
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108373112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
AAA
BRCT
AAA_22
Rad17
AAA_14
PTCB-BRCT
RuvB_N
AAA_30
TIP49
nSTAND3
BRCT_2
AAA_33
AAA_5
RCF1-5-like_lid
AAA_16
Motif
Other DBs
NCBI-GeneID:
108373112
NCBI-ProteinID:
XP_017484445
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MINVINEMQRDITSFFKRATPAKKVETANDDEEMQKSKLKKRTARVISSDEDEVPESPKA
PTKTPASKKKRVEEKLPRERKTHVNKKPSLSKLKNQSPKKLKPIDPNSVFGGETLRVEAK
KLPPPKIAAVIELDDEEIDKSLMEVDLEVSAQVEKNTNGRREDRRSKSKTPRKSPSRAKH
TPKKEEKREKNIDKTKEPKKEKEHIDDKPKKLEATPKTENKKDKSTPKAKKQLSEDLESS
VLSDEERHERKRLSAILYQKYKNRASVINPGSKEVPKGKPNCLAGLTFLVTGVLESLERD
EAASIIKELGGKMSTTVGKRLNYLIVGEEAGPKKLVQAEEFGVNVISEDGLFNLIREKSG
DVSDKETKNDISPDNIKVESTDLKNPNKQKLKVQEELKPTPPEKNRKPKKSPKVENVMKI
EKKEHNQETECNVQFKQKVDDANLQWVDKYKPTSVKEIVGQFGPTSNVSKLTNWLSKWYI
NHDGKKKLQKPNPWAKNDDGSFYKAALLSGPPGIGKTTTAILVCKELGFDTVEFNASDTR
SKRLLKEEVAELLSNKSLYGYFHGQGKEVTKKHVLIMDEVDGMAGNEDRGGIQELIALIK
DSSVPIICMCNDRNHQKMRSLVNYCYDLRFSKPRTQQIKGRILSICCREGFEIDPDKVNE
IIEATNNDIRQSINHISLLSAGKNLPSNSTKSACKTAEKDLKMGPWEVVRKVFSAEEHKH
MTLNDKCDLFFQDYSLGPLFVQQNYLQVSPVGSKSEVPAKVALTADALSLGDLVDKRIRS
DSAWSLLPTQAVFSSVMPGEYMSGHFTGQINFPGWLGKYSRTNKRNRLAQEIHDHTRLRT
SASRQSIRLDYAPFLLAKIVRPLKDKGMEGVKDSLDVLKEYHLLREDIDSLIELTAWPGK
KGLMDAVDGRVKAALTRAYNKEVLAYSYSVTAGVKKKKAEASEENELYTIEGEEEGNAAA
SDEEDDKIENDGLIKAKKSSATASSSKAKAGTSKGKTGSSAASKKTTSKASSTKARK
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgataaatgtgataaatgaaatgcagcgggacataacttcctttttcaagcgtgctacg
cctgcaaaaaaggtcgaaactgccaacgacgatgaggaaatgcaaaaaagtaaacttaaa
aaacgaaccgctcgagtaatatccagtgacgaagatgaggttccagaaagcccaaaggcg
cctacaaaaacgcctgccagcaaaaagaagcgcgttgaagagaagttgccgcgtgaaaga
aaaactcacgtcaataagaaaccatcactttcaaaattgaaaaaccaatctcctaaaaag
ctaaagccaatcgaccccaattcagtttttggaggggaaactcttcgtgtagaggctaaa
aagctgccacctccaaaaatagcagctgtcattgaattggatgatgaggaaatcgataag
agtctaatggaagttgatctagaagtaagtgcgcaagtcgaaaaaaatacaaacggaagg
cgagaagatcggcgttcaaagtcaaaaacaccgcgcaaaagtccatcgagggcaaaacac
acacctaaaaaagaggaaaaacgggaaaagaatatcgataaaacaaaagagcccaaaaaa
gaaaaggagcatatagatgataagccgaagaaattagaagccacgcctaaaactgaaaat
aaaaaggataagagcacgccgaaggctaagaaacaactctcggaagacctggaaagcagt
gtgttgtccgatgaggagcgtcatgaacgtaaacgcttatcagccatactctaccagaaa
tataaaaatcgagcaagtgttataaatcctggatcaaaggaggttccaaagggtaaaccg
aattgcttagcgggactaacatttttagtcactggggtattagaatctctggaacgagac
gaggccgcgtcaataataaaggaacttggaggaaaaatgagtaccactgtaggaaaaagg
cttaactatttaattgtcggagaggaagctgggcccaaaaagcttgtgcaggcagaagag
tttggtgtgaatgtgataagtgaggatggactgttcaacttgattcgagaaaagtcaggt
gatgtttcagacaaagaaacgaaaaatgacattagtccggataacataaaagtagaatca
acagatttaaaaaatcctaataaacaaaaactcaaagtccaagaagaattgaagccaacg
cctcctgaaaaaaatcgaaaaccgaaaaaatcgcccaaagtggagaatgttatgaaaata
gaaaaaaaagaacataatcaagaaactgaatgtaatgtccaattcaaacagaaagtagat
gacgcaaatcttcagtgggtagataaatataaaccaactagtgtaaaagaaatcgttggt
caattcggaccgacgagcaatgtgtccaagttgactaattggctctcgaagtggtacatt
aaccatgatggcaaaaagaaactacagaaacctaatccatgggccaaaaatgacgatggt
agtttttataaagcagcattgttatcaggtccaccaggtattggcaagacaaccacagct
atcctagtctgcaaggaattaggctttgacaccgttgaattcaatgcgtcggatacgcgt
agcaagcgtcttctaaaggaggaagtagcagagctactctcaaacaaatccctttacggt
tattttcatggtcaaggcaaagaggttacaaaaaagcatgtacttattatggacgaagtt
gatggcatggcgggcaatgaagaccgcgggggcatacaggaactaattgcacttataaaa
gattcctccgtgccgataatttgcatgtgtaatgatcgcaaccatcaaaaaatgcggtcc
ttagttaactattgctacgatctgcgtttcagcaagccacgaactcaacaaattaaggga
cgtattttgagtatttgttgtagggagggtttcgaaattgatcccgataaagtaaatgaa
ataatagaagcaactaataatgatatacgccaatctataaatcatatttcgttgttaagc
gctggaaagaatttaccatctaacagtactaaaagtgcatgcaaaaccgcagagaaagat
ttgaaaatgggtccttgggaggtggtgcgcaaagtattctccgccgaagaacataaacat
atgacacttaacgacaaatgcgacttgtttttccaagattacagcttgggaccattgttc
gtgcagcagaattacttacaggtgtcccccgtaggttccaagtctgaggtacctgctaag
gttgctcttactgcagacgccttaagtttgggtgacttagtggataaacgaatacgctcc
gattctgcttggtcgctgctgccaacacaggccgtgtttagttcagtaatgccaggagag
tatatgagtggccacttcacgggacaaataaatttccctggttggttaggtaaatattcg
cgaaccaataagcgaaatcgtttggctcaagagattcacgatcacacccgattacgtact
tctgcctcacgtcagtccattcgacttgactacgcccctttccttctggcgaaaattgtg
cgccctttaaaagataagggaatggaaggcgttaaagattcactggatgttctaaaagaa
tatcatctcttacgcgaagatatcgactctttgatcgaacttactgcatggcctggcaag
aagggtttaatggacgcggtagacggccgtgtgaaggcagctctaacacgcgcatataat
aaagaggttttagcatattcgtattcagtgactgcaggtgtaaagaaaaagaaagctgaa
gcaagcgaagaaaatgagttgtatactattgagggtgaagaggaaggtaatgcggcagcc
tcagatgaagaagatgataaaatagaaaatgatggtttgattaaggcgaagaaaagcagt
gcaactgcatcatcttcgaaagcaaaggctggcacatcaaagggcaaaactggaagcagt
gctgctagtaagaaaacaacaagcaaagcatcatctactaaggcaaggaaataa
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