KEGG   Rhagoletis zephyria (snowberry fruit fly): 108373609
Entry
108373609         CDS       T08513                                 
Name
(RefSeq) roquin-2
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:rze00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rze03000]
    108373609
   04121 Ubiquitin system [BR:rze04121]
    108373609
Transcription factors [BR:rze03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    108373609
Ubiquitin system [BR:rze04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108373609
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-C3HC4 zf-C3HC4_4 zf_CCCH_4 zf-CCCH_4 Vesi_VP2 zf-C3HC4_2
Other DBs
NCBI-GeneID: 108373609
NCBI-ProteinID: XP_017485014
LinkDB
Position
Unknown
AA seq 1186 aa
MPIQAPSWTDFLFCPICCNEFAVNHRLPISLGCGHTICRQCLANLHNRQCPFDQTTITTD
VDNLPINNALLQLVSTNSNNNSNNNSGNANDHRNNNGGGSEGPSRCDVDSNAVARHIPPS
VRQLNPEDLKCYNLANKCIESLALYLKSLVTNNGSFGSPLSRPMQRKLVTLVNTQLMERE
GRERVLRAARSLGERTVTELILQHQNPQQLSSNLWAAVRSRGCQFLGPAMQEEVLKLVLQ
ALEDGTAYSRKVLVMFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVSKREADSSLMQL
KEEFRTYDALRREHDAQIVQIATEAGLRIAPDQWSSLLYGDTVHKSHMQSIIDKLQTPSS
FAQSVQELVIALQRTGDPANLSGLRTHLKHLAGIDPSLESPPSSWQDVSKALEAVHEVVV
GLVEFVQHHGNRKLQEYSTGQTSTNTKYKISLCRDLTVRRNCPRGSSCTFAHSEEELEKY
RAKNRKSTKLGSSSDHTGAGPIASGNVNNANNAKGDFPPHTHSHNLGHNHHNPHPAALLH
PGNENSAPVSATTSPFRFGGPPPMHGKLPRGSYGDTSSSLHAHGPPGSHHQIRALHHSPI
PLNNGPTIPGPTAAHRYDASSFGNALNYPISGPGLSPHMSQGLSNVNSSPMAIRNSSGGV
LSPRNFQTSFQAPSPHPPLPPNLPTNNPPKLHGNNNLATSLSSPLSNKGIYNEFYNSGMI
GTNTRAPSLFSNNSSSGGIVGSGGGINGAEIKTHLGPPEKLMPLHIGGMWDQQHHLQIGN
RPAVTDILNITPGIGGSPMHQSTPLYPRSDSMSMFAKKVNNMNMDLNKTLNGLAIGESYM
FKNDYGIGDNTDIPRGALSSMPNHKNGLIGGDLQSRQSFWHAHNSNTGRGGNFVDNTQER
TSIVHSMGLNPSPGPFRDRDSFVRSDSILDDDAATFEEPATSASMGSKFGPICPMYKGHS
STAADVSSTNTYLNSWSSGDVRKQSTNKEHPLLDRNNSGDLNYSVFSSDTENSLALQLRQ
QLQRSANSQQQQRQHQNHQQQQQNLHRSLAFDNFNSIQNSLLPDLPFNHISNIALPNMLS
DVDDNANIDITKNSSMWNSSLKAMDSNYWNDSLSNAAANSNELQIQRQPHHQKQPQFQQQ
FINNNNKGRNSEEGIIDSGRMRDIEQELSEIVDKSWSNADDSGIKL
NT seq 3561 nt   +upstreamnt  +downstreamnt
atgcccattcaggcgccttcatggacagattttctcttttgcccaatttgttgcaatgaa
tttgctgttaatcaccgtctaccaataagtctgggatgtggtcatacaatatgtcgccag
tgtctggccaacttacacaaccgccaatgccccttcgatcaaaccaccatcacaaccgat
gtcgacaatttgcctataaataacgctttattgcagttggttagcaccaactcaaataac
aacagtaacaacaactctggaaatgccaacgaccacagaaataacaatggtggcggaagt
gaaggcccctcaagatgtgacgtcgactcgaatgcggtggctagacatatacctccaagt
gtacgccagctaaatccggaagatctgaaatgctataacttggcaaacaagtgtatagaa
agtctggcgctgtatctgaaatcccttgttaccaacaatggcagctttggaagtccactt
tcgcgaccgatgcaacgaaaacttgttactttagttaacacacagttaatggagcgcgaa
ggacgtgagcgcgtgttgcgagcggcacggtctctaggcgaacgcactgttaccgaacta
attctgcagcatcaaaacccacagcagctaagttcgaatctatgggcagctgttcgctca
cgtggttgtcaatttttgggccccgcaatgcaagaggaagttctgaaattggttttacag
gcactggaagatggaacggcttattctcggaaagttttagtgatgttcgttgtccagaga
ttagaacctcgatttccgcaggcgtcaaaaacaagtatcgggcatgttgtacagttattg
tatcgcgccagctgctttaaagtatcgaaacgcgaagccgactcgtctctaatgcagtta
aaggaagagtttcgtacttacgatgcacttcgacgtgaacacgacgctcaaatcgtacaa
atagccacggaagcagggttacgcatagctccagatcaatggtcttccctgctttatggg
gatacagtacataagtcgcatatgcaaagcattattgacaaattacaaacgccttcctct
ttcgcgcaatctgtacaagagttggttattgctctgcaacgcacgggcgatccggcaaat
ttatccggtttgcgaacacatctcaagcatttagccggcatcgatccttcgctagagagt
ccgccatcatcatggcaggatgtgagtaaagcattggaagctgttcatgaggtcgtggtg
ggactggtggagttcgtacaacaccatggaaatcgcaagctgcaagagtacagtactggt
cagacgagcacgaacacgaagtataaaataagtttgtgccgtgatttgacggtgagacgc
aattgccctcgtggttcaagttgcacttttgcacattcagaagaggaattggagaaatac
cgtgctaagaatcgtaaaagtacgaaacttggcagcagtagtgatcacaccggtgcaggg
cctattgccagtggaaacgtaaataatgcgaacaatgcgaaaggggattttccaccacac
acgcactcgcataacctgggacacaatcaccacaatcctcatccggccgctttgctccat
cctggaaacgaaaactccgccccagtttctgcaacaacatcgccatttcgattcggcggc
cccccacctatgcacggcaaattgcctcgcggtagctatggcgatacttcgtcatcttta
catgcgcacggcccaccaggctcacaccatcagatacgagccttgcatcacagtcccata
ccgttaaacaatgggccaactataccgggtccaaccgctgcacatcgctacgatgcatcc
tcctttggaaatgcgttgaattatcccatatcggggcctggattatcgccacatatgtct
cagggattgtccaacgtcaatagctcgccgatggcaatacgaaattccagtggtggcgta
ctctcacccagaaattttcaaacgagtttccaagccccgtcgccacatccgcccctacca
ccaaatttacccaccaataacccaccgaaacttcatggtaataacaatttagccacatct
ctaagcagtccactgtctaacaagggcatctacaatgaattctacaattcgggtatgata
ggaacaaatacgcgtgccccatctttatttagtaataatagtagtagtggtggtatcgta
ggtagcggtggaggcataaacggtgcagaaattaaaacccatttagggccacccgaaaaa
cttatgccgctacacatcggaggcatgtgggatcaacaacaccatctgcaaattggaaat
aggccagcggtcaccgacatattgaacataactcctggtattggaggctctccaatgcat
cagtccacgcccctatacccacgcagcgatagcatgtcaatgtttgccaagaaagttaac
aatatgaatatggatcttaacaaaacgctaaatggacttgcaataggtgaatcatatatg
ttcaagaacgattatggcattggcgacaatacagatattcccagaggagcactgtctagc
atgcccaatcataaaaacggtttgattggtggcgatttgcaatcgcgtcaatctttctgg
catgcgcacaacagcaatacggggcgtggaggaaattttgtagacaatacacaagaacgt
acttcaattgtacatagcatgggcttaaatccatctccaggcccattccgcgaccgtgat
agtttcgttcgttcagactccatattggatgacgacgccgcaacgttcgaagagcctgcc
acatctgcaagcatgggaagtaagtttggccccatatgtcctatgtataaaggtcacagt
agtacggctgctgatgtgtccagcaccaatacatatctcaatagttggagcagtggcgat
gtcagaaagcaatcaacaaataaggagcatccgttgctggaccgaaataactctggcgac
ctcaactactcagtattctcaagtgatactgagaacagtctggcattacaactccgtcag
caactacagcgctctgctaatagtcaacagcaacaacgccaacatcaaaatcatcaacaa
caacaacaaaatctgcacagatcattggcatttgataattttaacagcattcaaaattca
ttgcttccagatttaccattcaatcatatcagcaatatagcacttcctaatatgctttcc
gatgtcgacgacaatgccaatatcgacataactaagaattcctcgatgtggaatagtagc
ttaaaggcaatggattcaaactactggaatgattcattatccaatgcagctgcaaacagc
aatgaactacaaattcaacgccaaccgcaccaccaaaagcagccgcaatttcagcaacaa
tttattaacaataataacaaagggcgaaatagtgaagaaggtatcatagatagcggccga
atgagagatattgagcaagaactctctgaaatcgtggacaaaagctggtcgaatgcggat
gacagcggtattaagttgtag

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