Rhagoletis zephyria (snowberry fruit fly): 108374222
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Entry
108374222 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108374222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108374222
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108374222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_Aladin
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WD40_like
Beta-prop_SPT8
WD_LRWD1
Beta-prop_ACSF4
Nha1_C
Motif
Other DBs
NCBI-GeneID:
108374222
NCBI-ProteinID:
XP_017485688
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MSDDEDLQYVKRQRTIHYGSLEEVERKRQAGAPIAGGSSTAISSTSISGGVTNQLEDIDS
DEDYEEVKKPSASVLPPTSGALANKIDDDYFDLETEVAKDKEALLKEFERKKRARQINVS
TDDAEIKANLRQLNEPICYFGEGPAERRRRLKELLASLGENAIKQKQTEEEERKQLQKEQ
ETTWYHEGPEALRIARIWIADYSLPRAKERLEHARSQLDIPSATRAGRMVELQKRLHSLA
PQCSQVGDTRPVSGVAFSEDSMLLLTSSWSGLCKVWTVPDCKLLLTLRGHASYVGGVAFR
SGVSQEDANVVAMASGGHDGAVKLWGFNSEESLADITGHMPHRVSKVGFHPSGRFLATAC
YDSSWRLWDLEQKTEVLHQEGHAKAVHSLSFQTDGSVIVTGGLDAFGRVWDLRTGRCVMF
LEGHLGSIFGVDFSPNGFHIATGSQDNTCKIWDLRRRQPVYTIPAHTNLISDVKYQRDGG
SFLVTSSYDCTTKIWSNKTWQPLKTLLGHDGKIMAVDISPNSQHIVTASFDRTFKLWASE
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgatgaggatcttcaatatgttaaaaggcaacgaacaatacattatggttct
ctggaagaagtcgagagaaaacgtcaagctggggctcctattgcgggtggtagctctacg
gcaatttcatctacatcaatttctggtggggtaacgaatcaacttgaggacatcgactct
gacgaagattatgaggaagtaaagaaaccatcggcgtctgtgttgccgcctacttcaggg
gctttggctaacaagatcgatgatgactactttgacttggaaactgaagtagccaaggac
aaggaagctctactcaaagaatttgaacgtaaaaaacgtgcacgccaaataaacgtttcc
acagacgatgctgagataaaagccaatttgcggcagcttaatgaaccaatatgttatttt
ggtgaagggccagcagaaagacggcggcggttaaaggaattattggccagcttgggagag
aacgcaataaagcaaaaacagacagaagaagaggagcgaaaacaacttcaaaaagaacag
gaaacaacatggtatcacgagggaccagaagctttgcgtatagcaagaatttggattgcg
gactactcattgccacgtgcaaaagaacgattagaacatgcccgctcccaattggatata
ccaagcgcgactcgtgctgggcgtatggttgaacttcaaaagcgtttacattctttagca
ccacagtgcagtcaagtgggagatacgcgcccagttagtggagtagcttttagcgaagat
tcgatgttactactgacgtcgtcatggtcagggttgtgtaaagtgtggacagtgcccgat
tgcaagctattgttaacacttcgcggccatgctagctatgtaggaggcgttgcatttcga
tcaggtgtatcacaagaggatgcaaatgttgtggcaatggcgtctggaggacatgatgga
gcagttaagttatggggattcaattctgaggaatcactcgcagatataacgggtcatatg
ccacaccgagtttctaaagttggatttcacccgtctggtcgatttctggcaactgcatgc
tacgattcctcatggcgactgtgggatttagaacagaaaacagaagttttgcatcaagaa
ggccatgctaaagcggttcatagcctaagcttccaaacggacggtagtgttatagtaacc
ggcggattggatgcgttcgggcgtgtgtgggacctaagaacaggtcgttgcgtaatgttt
ttagaaggtcatttgggctctattttcggagtagatttttcgccaaatgggttccacata
gccaccggctcgcaagataatacatgcaagatttgggacttgcgacgccgacagcctgtt
tacactatacctgcgcatacaaatttaatatcggacgttaaataccagcgggatggcgga
agttttcttgttacatcttcctacgattgcactacaaaaatatggtcaaacaaaacatgg
caaccattaaaaactttattgggacatgatggaaaaataatggccgtagacatttccccg
aattctcagcatattgtgacggcttcattcgatcgtacctttaagctttgggcgtcggaa
agctga
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