Rhagoletis zephyria (snowberry fruit fly): 108374481
Help
Entry
108374481 CDS
T08513
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108374481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108374481
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108374481
mRNA degradation factors
3'-5' decay
Pan complex
108374481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4797
TFIIA
Pkinase
DDHD
VPS13_N
Motif
Other DBs
NCBI-GeneID:
108374481
NCBI-ProteinID:
XP_017485942
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MSTFLNNFFPADTAAMDPLFYPPSNGIPSESKLATYMVTPQSPEFIPTRINASPNFYTPY
HTPMLNNGLGNAGVNVAGGVRPSAAKSVSGTPSSLLGLQKATAAAVAQQKQLQQQQQQQQ
QQHHHQQQQSQQQQQQTQSSRALVNGVIPTTQQPTGTQAYVNMATPLKVRSNMLRNESPT
THGVGVGGGSGGGGGGGGGGGEKSPPRITPRTSPIPTTLPASVHQENVGGTIYFYPTANH
TAAANNSAVVSNVADPVSAHRAAPSAVAPIPPVQPPLLYTGHHVYPGPASNLIALQPKTH
LESAFFLPDEIRSEILARNEISNLMLDPAEATQHALPPEVDNYHSLYPLEPVQALHGKLT
ILASTYKATHSTTGIKYCLRRLHGFRLQSTKCMAIVEMWKKLQHSNVVQLREVFTTKAFG
DNSLVLVYDYHPGSHTLLTKYFTPTQEPNGYPDPFQGDARPFSHKSNLQRN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacattcttaaacaacttcttcccagctgatacagctgcaatggatcctctgttt
tatccgccttcgaacggtattccttcagaaagtaaacttgcaacatacatggtaactccg
cagtcacccgaattcattccaactcgcataaacgcgtcaccaaatttctatacaccttat
catacgcctatgctgaataatggtcttggcaatgctggtgtcaacgtagcaggtggcgtt
aggccctcggccgctaaatcggtaagtggtactccctcgtctttgcttggtctgcagaaa
gccactgctgccgcggtagctcagcagaagcagctacaacaacaacagcagcagcagcag
caacaacatcaccatcaacaacaacaatcacaacaacaacagcagcagacgcagtcgtca
cgcgccctggtgaacggtgttataccgacgacccagcagccgactggcactcaagcatac
gtcaacatggcgacaccactgaaagtgcgcagcaatatgcttcgaaacgaatcacccact
acccatggagttggagttggaggtggcagtggtggtggtggtggtggtggtggtggtggt
ggtgaaaagtctcctccgcgcatcacacctcgcacctcacccatcccaacaacgctgccg
gcgagcgtacatcaggaaaatgtaggcggcacgatatacttctatccaactgccaatcat
acagccgccgcaaataacagtgccgtggtgagtaatgtggctgatcccgtaagcgcccat
cgtgctgcaccatcggcggtagcgccaataccacctgtgcaaccgccattgctatacacg
ggtcatcatgtgtatccaggtccggcttccaacttgattgcattacaaccgaaaacacac
ttggaatctgccttcttcctgcctgatgagatacgttcagaaattcttgcccgcaatgag
atctcgaatttaatgctcgacccagccgaagcgacgcaacatgcgcttcctccggaagtg
gacaactatcactcattatacccattggagccagtacaggcgttgcacggcaaactcaca
atacttgcatctacctataaggccacacatagcaccacgggcattaaatactgtttgcgg
aggttacatggttttcgtctccaatcaacaaagtgcatggctatcgtggagatgtggaag
aagttacaacattcgaatgtggtacaactgcgtgaagtattcacgacaaaagcatttggt
gataattcgttagtattagtttatgattatcatcccggctcacacaccttgcttacaaag
tactttacgcccacacaggagcccaatggctatcccgatccattccaaggcgatgcgcgc
ccattcagccacaagagcaacttgcaacgcaac
DBGET
integrated database retrieval system
