Rhagoletis zephyria (snowberry fruit fly): 108374506
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Entry
108374506 CDS
T08513
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108374506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108374506
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108374506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_CcmH_CycH
NYD-SP28_assoc
DUF5798
DUF16
Crescentin
TPR_17
Exonuc_VII_L
Laminin_II
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
108374506
NCBI-ProteinID:
XP_017485965
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MIATTSQHVLSNNNNLPMKGDPHINANIKQDSLDRDSEAPLPPLPVPGFFKNVSDRVLKA
RVKLCEAPYDLEAWNVLVKDAQAKHVDVSRELYEQLVTQFPTCGRYWKLYIEQEIKYKNY
EKVEKLFQRCLVKVLNIELWKCYLSYIKEAKTNLQSFREKMGQAFDFALDKMGIDISSYS
IYNDYVQFLKGVDAQGNYAENQKISAVRRVYQRGILIPMANIESFWKDYLNYEQSINQMF
VEKAISDRSKDYMNARRVAKEFEVITRGLNRNAPATPPTSSAEEVRQVDLWKRYISWEKG
NPLKSEDSTLVIKRVVFAYEQCLLCLGHHPDIWYEYASYLEENSKLMAEKGDMNHHKALQ
EDVASLYERATSTLLKENVLLHFSFADFEESRNRKEEAMKIYEKLVKIKTEGFDPTLIYI
QYMKFSRRTESITSARGIFKRAREDPRCNYEIYSSAALMEYYCSKDINIACKIFELGLKK
FPHESNYILSYIDFLSHLNEENNIRVLFERVLSSDALPLDKSLEIWNKFLEFESQIGDLP
SVIKVEKRRSAVIDKLQRAASETSWIVDRYKFGSLMPCSAEELKSIGYVVEGSGGGRGSH
INSGSGGSGGGGGAGSAGKNATGGASGAGNGALGAASSLECPPAAPKARVFLPNLTQMVP
FKPVQSPAVIHIMESMMAYCSTTKFEDTSEAPTFLSSTFIDDFAFSTAACELYSNINDDI
TNNDATNLKSRDLIEEELINELEDSRKKIKRLETDLNYHRQHIDTIAEEHSELSKSLNEY
KVQLRKKDEKLEILNKTVNSLKCELESFYHTDTSANETTSSVSELHGTISYSSDSANNIQ
QVSSCTVETKAVEPKKEGDVPDCDVLKEFITKYNESLEEIFKLKEEVSRLNKVIVDLKDI
ISYRDQMVSTNCSHTSSPSPSTPIPTLADELSIENQEMPSVIMKAGNLDLSYENLVIHTT
FNVPSEEKSNNENDKAPSEEKSNNENKEKVPLDRKKCMYFVLITFIALICKGILLLEPTI
KLESELKPYYTIQEITSDFFNLLALYF
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgacaacaagccaacatgttttgtcaaataataacaatctaccaatgaagggt
gatcctcacatcaacgctaacattaagcaagattcactagacagagattcagaagcccca
ttgccgcctcttccagttcctggattctttaaaaacgtcagcgaccgagtgttgaaagca
agagtaaaactttgcgaggcaccatatgatttggaggcatggaatgtcttagtaaaagat
gcacaggcaaagcatgttgacgtttctcgtgagctttacgaacagctggtcactcagttt
ccaacatgtggacggtattggaagctatacattgaacaagagattaaatataaaaattat
gaaaaagttgaaaagctttttcaaaggtgcctcgtcaaggtgctcaacattgaactgtgg
aaatgttacctaagttatatcaaggaagcaaagaccaacttgcagtcatttcgcgagaaa
atgggtcaggcgtttgactttgcactcgacaagatgggaatcgacatcagctcctattcc
atatacaacgactatgtccaattcctgaagggtgtcgatgcgcagggaaactacgccgag
aaccagaaaatctccgccgtgcgacgcgtctaccagcgtggcatcctcattcccatggcg
aatattgaatcattctggaaagactacctcaattacgagcagagcatcaaccaaatgttt
gtcgagaaggccatttcagaccgctccaaagactacatgaacgcccggcgggtggccaag
gagtttgaggtgatcacccgtggactgaaccgaaatgcacccgccacgccgcccacctct
tcagcggaggaagttcgccaggtggacctctggaagcggtacatctcctgggagaaggga
aatccgctgaagagcgaggactccactctggtcatcaagcgagtggttttcgcctacgag
cagtgcctcctctgtctgggccaccatcccgacatctggtacgagtacgcgtcctacctg
gaggagaacagcaagctgatggcggagaagggcgacatgaaccaccacaaggcgctgcaa
gaggacgtcgcctcgctctacgagagggccacctccacgctgctcaaggagaacgtcctg
ctccacttctcctttgcagactttgaagagtctcgtaaccggaaggaggaggcaatgaag
atatacgagaagctagtgaagataaagacggaaggctttgatccgaccttgatttacatt
cagtacatgaagttctccaggcggacggagagcatcacctcggcgagaggtatcttcaag
agggcgcgagaggatccgcgctgcaactacgagatctactcttcggcagccctcatggag
tactactgtagtaaagacatcaacattgcctgcaagattttcgagcttggcctgaagaag
tttccccacgagtcgaactacattctctcctacattgattttctcagtcacctcaacgag
gagaacaacattcgagtgctctttgagcgggtcctctcctccgatgccctgccactggac
aagtcgctcgaaatatggaataaattcctcgaatttgaatcgcaaatcggcgacctgcca
agcgtgatcaaggtggagaagcggcgctcggcggtgattgacaagctgcagcgggccgcc
tcggagacctcgtggatcgtcgatcgctacaaatttggcagtctaatgccgtgcagcgca
gaggagctgaagtcaattggctacgtggtggagggcagcggcggcggcaggggaagccat
atcaatagcggcagcggtggaagcggcggcggcggcggtgctggcagtgctggcaagaat
gccactggcggcgcatccggcgctggcaacggcgccctcggagccgccagcagcctggaa
tgtccgcccgccgcgcccaaggcacgcgtcttccttcccaacctcactcagatggtgccc
ttcaagcccgtgcagagcccagccgtgatccacatcatggaaagtatgatggcctactgc
tctaccacaaagtttgaagacacttctgaagctcccacttttttatcttccacttttatt
gatgacttcgccttctctaccgccgcgtgtgaactgtacagcaacatcaatgatgacatc
acaaacaatgatgcaactaacttgaaaagtagagatctcattgaagaagaacttattaat
gagcttgaagatagtcggaagaaaataaaacgcctggaaactgatctgaattatcatcgc
cagcacattgacacaattgcagaggagcacagtgagttgtcaaaaagtctaaatgaatat
aaagtgcaactccgaaagaaggatgaaaaactggagattcttaataaaacggttaactct
ctcaaatgcgaacttgaaagtttctaccatacggacacttcggcaaatgagaccacttct
tcagttagtgaacttcatggcaccattagctacagcagcgattctgctaataacatacag
caggtgagtagctgtacagttgaaactaaagctgttgagccgaaaaaggagggcgacgtg
ccggactgcgatgttctgaaggagtttatcacaaagtacaatgaatcattagaagaaatt
ttcaaattgaaagaagaagtcagtcggctcaataaggtgattgttgacttgaaggacatt
atctcgtaccgtgatcaaatggtctccacaaattgcagtcatacctcaagcccgtctcct
tccactccaatcccaactctggccgatgaactgagcattgaaaatcaagaaatgccttca
gttataatgaaagctggaaatctagacttatcatatgagaatctggtcattcacacaacc
tttaatgtaccttcagaggaaaagagcaacaacgaaaatgacaaagcgccttcagaagaa
aagagcaacaatgaaaacaaggaaaaagtgcccttagaccgaaagaagtgtatgtatttt
gttctcatcacctttattgctctgatttgtaaggggatcctcctgttggagccgaccatc
aagttggaatcggaactaaagccctactacactattcaggaaattacctcagactttttt
aacctacttgccttgtacttttaa
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