Rhagoletis zephyria (snowberry fruit fly): 108374804
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Entry
108374804 CDS
T08513
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108374804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108374804
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108374804
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108374804
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
HA2_C
Helicase_C
DEAD
AAA_22
Flavi_DEAD
AAA_19
nSTAND3
Cas3-like_C_2
AAA_30
nSTAND_NTPase5
T2SSE
PhoH
SRP54
TsaE
Motif
Other DBs
NCBI-GeneID:
108374804
NCBI-ProteinID:
XP_017486349
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MSKNNKRAASSSSEELDSEEEDRLKDLKERDEFAERLKQRDEGNVRKVLESSASRKAIEE
ATKRLKLEHEDRDKILPQLRVQSRRKYLEKRKEDKVAELEADIVDDEYLFDEKILTTRER
EEREYKKQLLQIAKEHEKARELERIQRYHIPQNLKKGEKEEYVEVDELEKQPHSEQKKWE
VEQLASARFQFGSKDAKIKEEYELLLEDQIEFIQALTMDGSKDSSSKKDDISEAERKRMT
IEETQKSLPVYPFKEDLIEAVRKHQILIIEGETGSGKTTQIPQYLVEAGFTKDKKKIGCT
QPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCSSERTVLKYMTDGTLHREFLSEPDL
ASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAEKFSKFFDDAPIFR
IPGRRYPVNIFYTKAPEADYIDACCVSVLQIHATQPLGDVLVFLTGQDEIETCQEVLQDR
VKRLGSKIRELVIIPVYANLPSDMQAKIFEPTPPNARKVVLATNIAETSLTIDNIIYVID
PGFAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNT
VPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKL
GRRMAEFPVDPMMGKMLLASEKYKCSEELVSIAAMLSVNSAIFYRPKDKIIHADTARKNF
DHMHGDHLSLLQVYNQWVDTDYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDIVS
CLPETVNVRKAITAGYFYHVAKLSKNGNYKTVKHNQTVMIHPNSSLFEELPRWVLYHELV
FTTKEYMRQVIEIDSKWLLEVAPHYYKAKELEDSTNKKMPKVTGRAIMTD
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaataataaaagggcagcaagctccagctctgaggaattggacagcgaagag
gaggacagattaaaggatctaaaagaacgtgatgaatttgctgagcgcctgaagcagcgc
gatgaaggaaacgttcgtaaggtacttgaatccagcgctagccgaaaagccattgaggag
gcaaccaagcggttaaagctcgaacatgaagatcgggacaaaattctaccacagcttcga
gtgcagtctcgtcgaaagtatcttgagaaacggaaggaggataaagtagctgaactagag
gcagatattgtggatgatgaatacttattcgatgagaaaattttaaccactcgtgaaaga
gaggaacgggagtacaaaaaacaattgctacaaattgcgaaagagcatgaaaaggcgcgg
gagctggagcgaattcagaggtaccatattccgcaaaacttaaaaaagggtgaaaaagag
gaatatgtcgaagtggatgaattggaaaaacagccacactcagagcaaaaaaaatgggaa
gttgagcagctagcatccgcgagatttcaatttgggtccaaggatgcaaaaataaaagaa
gagtatgaactcttgctggaagatcaaattgagttcatacaagcgcttactatggacggt
tctaaagatagttcttcaaagaaagatgatatatctgaagctgaacggaaacgaatgaca
atagaagaaacgcaaaaatctcttcctgtatacccttttaaagaggacttaatagaggct
gtgagaaagcatcagattttaataattgagggagaaactgggtctgggaaaacaacgcaa
atccctcaatacttggtggaagctggctttacaaaagataaaaagaaaattgggtgcact
cagcctagacgtgttgctgctatgtccgtagctgcacgtgtcgctgaagaaatgggcgta
aagctcggaaatgaagttggatacagtattcgtttcgaagattgttcttcagaacgtaca
gtactaaagtacatgactgatggtacattacacagagagtttctttcggaacctgatctt
gcatcctatagcgttatgatcattgacgaagctcatgagcgtactttgcatacagacata
ttgtttggtttagtaaaagacatagcgcgttttcgaccagaactaaaacttcttatatcc
agtgcaacattagatgctgaaaagttttcaaagtttttcgacgatgcgccgatatttcgc
atacctggccgtagatatccggtcaacatattctatacgaaagctcctgaagcagattat
attgatgcgtgttgcgtttcggttttacaaatacatgccacacaacctcttggagatgta
ttagtctttctaacaggtcaagatgagatagaaacctgtcaagaagttttgcaagatcgc
gtaaaacggcttggctcaaagatacgtgaactagttataatacctgtatacgcaaatcta
cccagtgacatgcaggcgaaaatttttgaaccaacgccgccaaatgccaggaaagtagta
ttggcaactaatatagcggaaacttcactaacaattgacaacattatctatgtgatcgat
ccgggatttgcaaagcaaaataattttaattcccgcactggcatggaatcgttgatggtc
gtaccaatttctaaggcgtcggcgaatcagcgagctggacgtgctgggcgcaccgctcct
ggcaaatgctttcgtctttatacagcttgggcttataagcatgaattggaagataacact
gtgcctgaaattcagcgcataaatcttggaaatgcggtgctaatgctaaaggcactcggt
ataaatgatctgatacactttgacttcttagaccctcctccacatgaaacgctggtttta
gccttggaacagctctacgcactgggtgctttaaatcatcatggcgaactgacgaaattg
ggtagacgaatggcagagtttccagtggatcccatgatggggaaaatgctattggcgagc
gagaagtataagtgctcggaagaattggtgtccatagctgcaatgttatctgtaaacagc
gcgattttctaccgaccaaaagacaaaattattcatgcagatactgctcgaaagaatttc
gaccacatgcatggtgatcatctaagtctgctgcaggtctacaatcaatgggttgatacc
gattatagcacacaatggtgttacgagaatttcattcagtatcgctccatgaaacgagct
cgcgatgttcgtgaacaattggtgggtttgatgcaacgtgttgaaatcgatatagtttcc
tgcttgcctgagacagtaaatgtaagaaaagccataacagctggatacttctatcatgtt
gcaaaattgtctaaaaatggcaattataaaaccgtaaaacacaatcaaactgtaatgatt
catccaaattcgtcgctttttgaagaactgccaagatgggtgctgtaccatgaattagtg
tttacaacgaaagagtatatgcgtcaggtgatcgaaatcgatagtaagtggctgttggaa
gtggcgccgcactactataaagcaaaggaacttgaagattcgacgaataagaagatgccc
aaagttacaggccgtgcaataatgacggattaa
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