Rhagoletis zephyria (snowberry fruit fly): 108376401
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Entry
108376401 CDS
T08513
Name
(RefSeq) ATP-dependent RNA helicase dbp2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108376401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108376401
03009 Ribosome biogenesis [BR:
rze03009
]
108376401
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108376401
Spliceosome [BR:
rze03041
]
Complex A
U1 snRNP components
U1 related factors
108376401
Complex B
108376401
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
Helicases
108376401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
Utp25_C
Motif
Other DBs
NCBI-GeneID:
108376401
NCBI-ProteinID:
XP_017488096
LinkDB
All DBs
Position
Unknown
AA seq
716 aa
AA seq
DB search
MFDRRNGAPAGGMGGMGGNAGGGGYRDQQRGGPMRGSGIARPRPAPYARGGIGGNGAPFR
GGPPRGGNNDRGMNGGPINNGSPGDRLPNIIWSEIKLSPFQKNFYQPSTTVAERSKTDVD
GYLTTNEVTLKGDSIPSPSIEFSEPGFPDHVLAGIKKMGFAKPTAIQAQGWPIALSGRDM
VGVAQTGSGKTLAYVLPAVVHISHQARLERGDGPIALILAPTRELAQQIQQVANDFGSQT
HVRNTCIFGGAPKQPQARDLERGVEIVIATPGRLLDFLERGVTNLRRCTYLVLDEADRML
DMGFEPQIRRIIKQIRPDRQVLMWSATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNIL
QIVDVCEENEKDNKLIKLLSEISAESETKTIIFVETKKRVDEITRTIGRSGWRVCAIHGD
KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGR
SNNTGTAYTLFTTSNANKANDLIQVLREANQVINPRLVEMASSSGYNNKRNSRGGYQNRG
GMGGGGGYGNRGNRSYGNNAGGMGGAQSYQQRPPQIANGGQMYQRPSGPPSRFSAAPQAG
YDRSQHTGGNKPYGAGAGAEGGDKRRFNPQQQPPQQSLGYQQQPPRMSYGGNNAHHQPPP
NHRAAGSASAGASGMYAHAPPSHHSGGSNYAVPSGFGAASGNNMFAYPPPPLPAQN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatagacgtaacggagctccagctggtggaatgggcggtatgggtggcaatgct
ggtggcggcggctatcgtgatcagcaacgcggcggtccaatgcgtggcagtggtattgca
cgtcctcgtcctgcaccttatgctcgcggtggcatcggtggcaatggtgctccgtttaga
ggtgggccgccacgtggcggcaacaatgatcgtggaatgaatggcggacccatcaacaac
ggctcacccggggatcgtttgcctaatataatctggtcagaaataaaattgtcgccgttc
caaaaaaacttctatcaacctagtacgactgttgccgaacgctcaaaaacagatgtggat
ggttatctcacaaccaatgaggttactttgaaaggtgatagcattccatcgcccagcatt
gaatttagcgagcctggttttccggaccatgttttagctggaataaagaagatgggattt
gccaagccaactgctatacaagctcagggttggccgatcgctcttagtggacgggacatg
gtcggtgtagcacagactggctcgggtaagaccctcgcttatgtgttgcccgctgtggta
cacatcagtcatcaggctcgtttggagcgcggtgatgggccaatcgctctcattttggcg
cctacgcgtgaactagctcaacagatacaacaagttgcaaacgatttcggttcccagact
catgtacgcaatacatgcattttcggcggagcaccgaaacaaccacaagcgcgtgacttg
gaacgcggtgttgaaattgtgattgctacacctggccgcctactcgatttcctagagcgg
ggcgtaaccaacttgcgccgttgtacttatctagtattggatgaggctgatcgcatgcta
gatatgggatttgaaccacaaattcggcgtataataaagcagattcgcccagatcgtcaa
gtgttaatgtggtcggcgacatggccaaaagaagtgcgcaatcttgctgaagaattcctt
gataactatatacagattaacattggctcactaacactttcagccaatcacaatatactc
caaatagtagatgtgtgcgaagagaatgagaaagataataagctcataaagcttttgtcg
gaaatttctgccgaatccgaaacgaagacaattatcttcgtggagacaaagaaacgtgtc
gatgaaataacccgtactattgggcgtagtggatggcgcgtgtgtgctattcacggcgac
aagtcgcaacaagagcgtgattttgttttgtcgtcatttcgtaatggacggcactcaatt
ttggtagcaaccgatgtggctgcacgcggcctagatgttgacgatgttaaattcgtaatt
aattacgattatccttcgaattcggaggactacgtgcatcgcatcgggcgtacagggcgc
tcgaacaatacgggaacggcatacaccttgtttaccacttcaaacgccaacaaagctaat
gacttgatacaagtgctgcgcgaagctaatcaggtcatcaatccacgacttgttgagatg
gcatcatcttcgggctataataataaacgcaactcgcgtggtggctatcagaatcgtggt
ggtatgggtggtggtggtggctacggcaatcgcggtaatcgctcttatggtaacaatgct
ggcggcatgggtggcgctcaatcatatcagcagcgtccaccacaaatagctaatggtggc
caaatgtatcaacgtccgagtggaccaccttctcgattctcagccgctcctcaagctggc
tacgatcgcagccagcacaccggtggcaataagccttatggtgccggtgctggagccgaa
ggtggtgataagcgacgtttcaatccccagcaacaaccgccacagcagtctttaggttat
cagcagcaacccccgcgcatgtcatatggaggcaataatgcacaccatcaaccgccgcca
aatcaccgggcggcaggcagtgcttctgcaggtgcatccggaatgtacgcacatgcacct
ccttctcatcattcaggaggcagtaactatgccgttccctctggatttggagcggcgtcc
ggcaataatatgtttgcttatcccccgcccccattgcccgcgcaaaactaa
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