Rhagoletis zephyria (snowberry fruit fly): 108376440
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Entry
108376440 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108376440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108376440
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108376440
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108376440
mRNA degradation factors
3'-5' decay
Ski complex
108376440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
DEXQc_Suv3
ResIII
MTR4_beta-barrel
DUF4832
ATPase_2
Motif
Other DBs
NCBI-GeneID:
108376440
NCBI-ProteinID:
XP_017488143
LinkDB
All DBs
Position
Unknown
AA seq
870 aa
AA seq
DB search
MDDNIQKLQNYIISPDLPIHNPLPEVIPRRFDETRLLHLPKGAASTKLVPRRDFVTGEII
EFVEVDLEDVGANACNSTSMRREPGLLEEATRGSAMNFPFWPGGLDEPPREIKKLSIDLD
FGTELLTLPPGFRKGYNFETNVETLSPGSILVSNDKVNLLENLEKDLDVQEWLKLAEQPT
EADSVTVLDNSTEFKDVEEQIMNADLKPVLEISNTNTKSAFSSEWAEMVDISHPIASFKE
KIPCPAMTYPFELDIFQKQAILKLEERQYVFVAAHTSAGKTVVAEYAIALSQRDLTRTIY
TSPIKALSNQKYRDFKKTFKDVGLITGDLQIDPTASCLIMTTEILRSMLYCGSEITRDLE
YVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKKRKVYVI
STLKRPVPLMHYLYTGSGGKSKDDIFLLVDADGKYLQQNYEKAVERKKEMQSKSKGAQGS
GCPTAKNFVSAKQDQNMWIGLIDFLKRNNKMPVVAFTLSRNRCDINLQALQSVDLNTARE
KGSAQKFFQQCLQKLXIDGEVIIRNWEQRQIERFKDSPPSATVVKAVSELQQLNQSYIDK
PETLKFMNLSKEVNISEENELAQIRYTEHLWKQLLAVLPHTNIAGFEQEFAIVYERKVLE
RCIEELKFKNSTKNLSLYPDYCNKLEVLRSLKYIDDLDEVTLKGKVACEMGQNELLITEL
ILCNMFNDLEPAEIAALLSGLVFQGKIQGEPVIPEKLKKCVKEFEEINDAILAEELRHQT
VIESDNRLNFGLLEVVYEWARNKPFAEIMKLTEVQEGIIVRCIQQLDETLRDVKTAAIRI
GNPALQTKMEDASTAIKRDIVFTASLYTAI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatatacaaaaattacaaaattatattatatctccggatttaccaatacat
aatcctttgccagaagttatacctcgacgctttgatgaaacgcgtcttttacatttaccg
aaaggtgctgccagcaccaaattagtgccacgtcgcgactttgtaaccggcgagattata
gaatttgtcgaagtagacttggaagatgttggtgccaacgcatgcaactccacttcaatg
cgccgggagcctggtcttctagaggaagcaacacgcggatcagctatgaattttcctttt
tggccgggtggattagatgaaccgccaagggaaatcaaaaagctaagcattgatctggac
tttggcacagaactgttgaccctgccgccaggatttcgaaaaggctacaatttcgagacc
aacgtggaaacactttcccctggttcaattttggtaagcaatgataaagtaaatctcctg
gaaaatttagaaaaggatctcgatgttcaagagtggcttaagttggcggaacaaccaacg
gaagctgattcggtcacagttcttgataactcaacagaattcaaagatgtagaagagcaa
attatgaatgccgaccttaagccagtattggaaatctcaaacacaaacacaaagtctgct
ttcagtagtgaatgggctgaaatggttgatatctcgcatcctattgctagtttcaaagag
aaaattccatgccctgccatgacctacccatttgagttggatattttccaaaaacaggca
attcttaaattagaagaacgtcaatatgtcttcgtagccgcgcatacgtctgccggtaaa
acagtagtggcagaatatgctatagccctgtcgcaacgcgatttaacgcgtacaatatac
acttcacccattaaggcgctatctaatcaaaaataccgcgacttcaaaaaaactttcaag
gatgtaggactgataactggcgatctacaaattgatcccactgcttcctgcctcattatg
actacggagattttgcgctccatgctttactgcggtagtgaaataacacgagatctcgaa
tatgttatttttgacgaagtacactatataaacaatcctgaacgtggtcatgtttgggaa
gaggtgataatacttcttcccgaccatgtgaatataattatgttgagcgctacagtgccg
aatacaatggagctagctgattgggttggcagcactaaaaaaagaaaagtatatgttata
agtacccttaaacgtccagttcctcttatgcattatctttacaccgggagtggtggcaag
agcaaagatgatatatttttattagttgacgcagatggtaagtatctgcagcaaaattac
gaaaaggcggtagaacgcaagaaagaaatgcaatccaagtcaaaaggagcgcagggtagc
ggctgtccgacagcgaaaaactttgtaagcgctaaacaagatcaaaacatgtggatcggg
ctaatagactttctgaagcgtaataacaaaatgcctgttgtagcgtttacactatcacgc
aatcgttgtgacatcaatttgcaggctctacaatcagttgacttaaacacagctcgcgaa
aaaggatctgcgcaaaaatttttccaacaatgtttgcaaaaacttncaatcgatggcgaa
gtgataatacgtaattgggagcaacgtcaaatcgaacgtttcaaagactcgccgccaagt
gcaacagtggtaaaggccgtaagtgaattacaacagctcaaccaaagctatatagacaaa
ccggaaacattgaagttcatgaatctgtccaaagaggttaacataagtgaggagaatgag
ttggctcaaatacgttacacggaacatttatggaaacaattactcgctgtactgcctcat
acaaatattgctgggtttgaacaagaattcgcgattgtttatgaacgcaaagtgttggag
cgctgtatcgaagaattgaaatttaaaaattcgactaaaaatctctctctttatccagat
tattgcaataaattggaagttttgcgttcacttaagtatatcgatgatttagatgaggtt
accctaaaaggcaaagttgcttgtgaaatgggacaaaatgagctcttaataactgaacta
atactgtgcaatatgttcaatgacctcgaaccggcggaaattgcagcattgctgtcgggt
ttagtatttcaaggaaaaatccagggagaaccggtgattccggagaagctaaaaaaatgc
gtgaaagaattcgaagaaatcaatgacgccattttagctgaagaactgcgacatcaaaca
gtcatagaatcagataatcgcctcaattttggattactagaagttgtgtacgaatgggct
cgtaataagccttttgcagaaataatgaaattaactgaagtgcaagagggtataatagta
cgttgcatacagcaattggatgagactcttcgcgatgttaaaactgccgccatacgtatt
ggcaatccagcgttacagaccaaaatggaggatgcatctactgccattaaacgagatata
gtcttcacagcaagtttgtacacagcaatataa
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