Rhagoletis zephyria (snowberry fruit fly): 108377387
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Entry
108377387 CDS
T08513
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03022
Basal transcription factors
rze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108377387
09124 Replication and repair
03420 Nucleotide excision repair
108377387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108377387
03036 Chromosome and associated proteins [BR:
rze03036
]
108377387
03400 DNA repair and recombination proteins [BR:
rze03400
]
108377387
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108377387
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108377387
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108377387
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108377387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
Zn_ribbon_2
Lys
Motif
Other DBs
NCBI-GeneID:
108377387
NCBI-ProteinID:
XP_017489133
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MCQLKKCLDARGHGVLEMPSGTGKTISLLALIVAYQLKHPLKLKKLIYCSRTIPEIEKVV
EELHKLNNYIAEENGGTESGIVGLCLTSRKNLCIHPLASRQKDGKAVDGMCYSMTASHKR
AKNRGTSRNGNGEEGGDIESAGESRDLENCCTFYERFEEDGGGESTLPAGIYNIDDLKAY
GRQKGWCPYFAARQALSYANIVVYSYYYLLDPKIAELVSKELTKNSVVVFDEAHNIDNVC
IESMSVTINRRLLDKCSANIDQLETAVAGIKSADASKLEAEYHRLVEGLYEASQAKKADL
FLANPVLPADILTEAVPGNIRTAEHFIRFLKYLLEYVKSRLRVQHVTTESPAAFLKHIYD
RMAIERKPLRFCAERLRSMIRTLEVNNITDFTPLTLLCNFATLVSTYLRGFTLIIEPFED
RTPNVPNPVLHFSCLDASIAIKPIFERFQTVVITSGTLSPLEMYPKMLDFTPVVAATFTM
TLSRQCILPLIVTKGNDQVPMTSKFESRNDASVIRNYGALLVELSAVVPDGIVCFFTSYL
YMEQIIASWYEQGIIDSVQKNKLLFIETQDAAETSLALYNYVKACENGRGAVLLSVARGK
VSEGIDFDHHLGRCVVMFGIPYVYTQSRILKARLEYLAEHYQVRENDFLTFDAMRHAAQC
VGRAVRGKTDYGIMCFADKRFSRDDKMRKLPKWIQENMSKAVLNLSIEEAVQISKKFLRQ
MAQPFSKDDQLGLSLLTLEQLKDETRQKKIAAKVELLK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtgccagctgaaaaagtgcctcgacgcgcggggccacggcgtcctggagatgccctcg
ggcaccggaaagacgatctccctgctcgctctgatcgtcgcctaccagctgaagcacccg
ctgaagctgaagaagctgatctactgctcgcgaaccatcccggagattgagaaggtggtg
gaggagctgcacaagctgaacaactacatcgccgaggagaatggcggcacggaaagcggc
atcgtcggcctctgtcttacctcgcggaagaacctctgcattcacccactggccagtcga
cagaaggacggcaaggcggtggacgggatgtgctacagtatgacggcttcgcataagagg
gcgaagaacagaggcacttcgagaaacggaaacggagaagaagggggagacatagaaagt
gcaggtgaatctcgggacctcgaaaattgctgcaccttctacgagcgcttcgaagaggac
ggcggcggcgaatcgaccctgcccgccggcatctacaacatcgacgacctgaaggcctac
ggccgccagaagggctggtgcccctacttcgccgcccgccaggccctttcctacgcgaac
atcgtcgtctacagctactactacctgctcgacccgaagatcgccgagctggtgagcaag
gagctgacgaagaactcggtggtggtcttcgacgaggcgcacaacatcgacaacgtctgc
atcgagtcgatgagcgtcaccatcaaccgccgcctgctcgacaagtgctccgccaacatt
gaccagctggagacggccgtggcgggcatcaagtcggcggacgcctccaagctggaggcg
gagtaccaccgcctggtggagggcctctacgaggcgtcgcaggcgaagaaagcggacctc
ttcctcgccaaccccgtcctcccggcggacatcctcaccgaagccgtgcctggaaacatc
cgcaccgccgagcactttatccgctttctgaagtacctgctggagtacgtcaagtcgcgg
ctgcgtgtgcagcacgtcaccacggagagtccggccgccttcctcaagcacatctacgac
cgaatggccattgagcggaagccgctccggttctgcgccgagcgcctccgctcgatgatc
cggacgctggaggtgaacaacatcaccgactttacgccgctgacgctgctgtgcaacttt
gccacgctggtcagcacctaccttcgaggttttacgctcatcattgagccctttgaggat
cggacgccgaatgtgcccaatccggtgctgcactttagctgcctcgatgcgagcatcgcc
atcaagcccatctttgagcgctttcaaacggtggtgatcacctcgggcacgctcagtccg
ctggagatgtaccctaagatgctcgacttcacgcccgtagtggcggccaccttcacaatg
accctcagccggcagtgcatcctcccgctcatagtcacgaagggcaacgaccaggtgccg
atgacgtcgaagtttgagtcccgaaacgacgcctccgtcatccgcaactacggcgccctg
ctggtggagctctccgccgtggtgccggatggcatcgtctgcttcttcaccagctacctc
tacatggagcagatcatcgccagctggtacgagcagggcatcatcgactcggtgcagaag
aacaagctgctcttcattgagacgcaggacgccgcggagaccagtctggcgctgtacaac
tacgtcaaggcctgtgagaatggccgaggggcggtcctcctctcggtggcccgcggcaag
gtcagcgagggcatcgactttgaccaccacctggggcggtgtgtggtgatgttcggcatc
ccgtacgtgtacacgcagtcccgtatactgaaggcccggctggagtacctggctgagcac
taccaggtccgggagaatgactttctcacctttgatgcgatgcgccacgcggcgcagtgt
gttggccgggcggtgcgaggaaagaccgactatggcattatgtgctttgctgataagcgt
ttttcccgtgatgacaagatgcgcaagctgccgaagtggatccaggagaatatgagcaag
gcggtgctcaatctgagcattgaggaggcggtgcagatctcgaagaagtttctccggcag
atggctcagcccttttccaaggacgaccagctagggttgtcgctgctcacgctggagcag
ctcaaggatgagacccggcagaagaagattgcggcaaaggtggagctgctcaagtag
DBGET
integrated database retrieval system
