KEGG   Rhagoletis zephyria (snowberry fruit fly): 108377455
Entry
108377455         CDS       T08513                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03030  DNA replication
rze03410  Base excision repair
rze03420  Nucleotide excision repair
rze03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rze00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108377455
   03410 Base excision repair
    108377455
   03420 Nucleotide excision repair
    108377455
   03430 Mismatch repair
    108377455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rze03032]
    108377455
   03036 Chromosome and associated proteins [BR:rze03036]
    108377455
   03400 DNA repair and recombination proteins [BR:rze03400]
    108377455
DNA replication proteins [BR:rze03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108377455
  DNA Replication Termination Factors
   ELG1-RFC complex
    108377455
Chromosome and associated proteins [BR:rze03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108377455
DNA repair and recombination proteins [BR:rze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108377455
  Check point factors
   HRAD17(Rad24)-RFC complex
    108377455
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 AAA_14 AAA_16 Mg_chelatase Viral_helicase1 Rad17 AAA_18 AAA_19 DNAX_ATPase_lid nSTAND3 MeaB AAA_24 AAA_5 AAA_assoc_2 AAA_23 ABC_tran AAA_11 RuvB_N MnmE_helical RNA_helicase NTPase_1 DEAD AAA_2 AAA_28 AAA_30 AMP-binding_C_3 AAA_7 MCM AAA_3 SRP54 ATPase_2 AAA_29 KTI12 bpMoxR CH IstB_IS21 AAA_33 DUF815 FtsK_SpoIIIE AAA_25 ATP_bind_1 SRPRB CbiA
Other DBs
NCBI-GeneID: 108377455
NCBI-ProteinID: XP_017489208
LinkDB
Position
Unknown
AA seq 332 aa
MPQELETSADELKRRNLPWIEKYRPIRFEEIVGNEDTIARLSIFATQGNAPNIIIAGPPG
VGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVI
LDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDGQIL
AKLIEVCQRENLSYEEDGLEAIVFTAQGDMRQALNNLQSTAQGFGSITGSNVFKVCDEPH
PMLIQDMLQHCTQNDIHKAYKILTKLWRLGYASEDIIGNIFRVCKRLNIDEQTKLNFIKE
IGITHMKVVDGLNSLLQLTSLLAKLCDIADIH
NT seq 999 nt   +upstreamnt  +downstreamnt
atgccgcaggaactagagacaagtgcagatgagttgaagcgtcgtaacttaccgtggatt
gaaaaatatcggcctataagatttgaggagatcgttggaaatgaagatacaattgcccgc
ctttcaatttttgctacgcaaggaaatgcgccaaatattataatagcgggtcctccaggt
gtaggcaagacaacaaccatccaatgtctggcacgcattttgctcggagacagctataaa
gaagccgtgctcgagttaaatgcatctaatgaacgtggtattgacgtagttcgcaacaaa
ataaaaatgttcgcccagcaaaaggttacattgccaagaggaagacataaaatagttata
ctagatgaagccgatagcatgaccgaaggggctcaacaagcacttcgcagaacaatggaa
atttatagtaatacaacgcgtttcgctcttgcttgcaataccagcgaaaaaattattgaa
ccaatacagtcacgttgtgcgatgctacgtttcacaaaactttcggatggtcaaatactt
gctaaattaatcgaagtttgccaacgagaaaatctctcttatgaagaagatgggttagaa
gcaattgtttttaccgcgcaaggtgatatgaggcaagcattgaacaatttgcaatcgact
gctcaaggtttcggatctattacgggttcaaatgtgtttaaagtttgtgacgaaccgcat
ccaatgcttatccaagatatgctgcaacattgtacacaaaacgatatacacaaggcttac
aaaattctcacgaaattgtggcgccttggttacgcttctgaagatataattggaaacata
tttcgagtttgcaagcgattaaacatagatgagcaaactaaactaaactttattaaagaa
ataggaatcacccatatgaaagtagtggatggattgaactctttgcttcaactcacaagt
cttttagctaaattgtgcgatattgctgatattcattaa

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