Rhagoletis zephyria (snowberry fruit fly): 108378843
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Entry
108378843 CDS
T08513
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108378843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rze03032
]
108378843
03400 DNA repair and recombination proteins [BR:
rze03400
]
108378843
DNA replication proteins [BR:
rze03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
108378843
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108378843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
BRCT_3
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
108378843
NCBI-ProteinID:
XP_017490641
LinkDB
All DBs
Position
Unknown
AA seq
1515 aa
AA seq
DB search
MSFDDTINAYFVTTSTVENPDPSKCKDLETAFTHLRDHIPEENIRHIKASEGFPLIASGQ
LTKKDVFIFDKFEGDFFMQLKLTKSLIIGPRCLITCLLSSLPVPLGPSPIYTTAMRDLHI
CATGIAPDQKERVRTYIQWMGGYYFQNLSRPVTHLISNTIKSTKYEHASLNGIPVMHVDW
VQRVWERSSVEDVSATDEEFEKYKLPIFFGTNITCTGLDTEKKNEIMRLVNENGGTYHCA
FRSALVDIVITARGSTNSDKYKAAVKFKKEILCPEWIFDSAEKGFALPTKGYKVKSLKVS
TPIKEDRSIADFTHLSDTSRISVMGGPGRNYRSELATVNDTISSGVNETQQNDNTFVAPV
TRATTSKDLQREVHLKQGATEHYRLVYEEICPKQAKKAGNFLDGCCIYLSGFRLEEREKL
NRILNVGGATRYDVVNEKITHIIVGQLDDGELRSWKRDGILTTVNIVRLDWLLQSIKLKQ
AASEIVYRMSLPTTREPDAPSPSSKKTLRSMNHSFKHPEKPKKKLFESEEKATESVTSQA
KSTDLPLEEEEQHIIAQYSQENEPAAAVPVGTTAIKSNNNLADQTQSAPMASSTLKPLAN
IIPQPAANPSADNENSTKMNTEIDFDNLDFFDGKSLYIDRAHFPEEFYSQMLGECEAAHG
DIVPATFVDIVDYAIVSFERTLNVHDLPVKARHIVTDLYVENCMKQNKLVPIEYFHRHVP
HTANSQPLVGMTIVISTYTALEYDFIDSVAQLLGATVNRVLAKKERPLLVCPRAEGSKYE
GAIKWGYPIVTSAWLVQCAVEGKKLSFQPYLVGNSPPDFPVSPTLREKNLPNPAARAPSN
ASVEPMDTQENAENDLALGVTAANEFTPLRNKRVTELAGSISRNSRPSSNLPTNNTPVTP
DSPHTPTNSYGRSSCNFEYLEGVVAELDNEDARACLRELIEEMRNNQTPELERIRRQACT
PINRKLPTPKGIPDFCTTPEFQKRMADALERRWRLPTKKLKIDTPIDELRRRVLRSTCEA
LGIPFTDTEETPTTSAKAAKKALAATAELSALAAQTPNTHLNPTRKSNDSKVESHQQLPG
VVPRAIFTTGVNSNLNTSERRTTRVSDGDAFVPMTQSPTRGSSLGGEESRMVQQASFGKT
TIDFDKITFENTETDTVTNVATQNIIAQDQSGSRSASGLATSSPELQKITEYLKNCESRR
QSLKQSRRATGLGNASSGAASDSVETMVDNIDIDMPACGAVETETQHYVQPFESEQFGVG
TENMVGWRDPVEFGKERRSKASPSMQYKGIPRFSISCVDEDARNDIINKIHTLGGTVSEN
LVNFDPDCTHFICERPNRGEKMLGCVSSGKWVLSLKYIEECYAKDVFVDEELYEWGNSKA
LNLPQLTPDEQLLASAVHRWRKKLNDTTSADGRKLGAFSGFRVILHIAERNSEAVKNVLR
AGRGDVMTVQSPFNTCSAAKNATHCFVDVKKAPLTRSDYDYLRTLGVKIYSQMYINSYLM
YGEEVDAAKYEIKIQ
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgacgacaccattaatgcatattttgtcaccacaagtactgtggaaaatcca
gacccatcaaaatgcaaagatttggaaacggcatttactcacctccgagaccacataccc
gaagagaacatcagacatataaaggcaagcgaggggtttccgctcatagcctcaggacaa
cttacaaagaaagatgtatttatcttcgataaatttgaaggtgacttttttatgcaactc
aagctaacaaagtcactcataattggtccgcgatgtcttataacttgcttgctaagttct
ctacctgtgccccttggcccaagtccgatttacaccacggcaatgcgggacttgcatata
tgtgctactggtattgccccagatcagaaagaaagagtacgcacatacattcagtggatg
ggtggttattacttccagaaccttagtcggccagtgacacatctaatttcgaacaccatt
aagtctacaaaatatgaacatgcatccttgaatggaattcctgtaatgcatgttgattgg
gtacagcgcgtttgggaacgcagctctgttgaagatgtttcagcaacagatgaggagttt
gaaaagtacaagctgcccatcttctttggaacgaacataacatgtacaggattggacacg
gagaaaaaaaatgagataatgcgtttagtaaatgaaaacggtggcacgtaccactgtgca
tttcgttcagcgcttgtcgatatagtcattactgcgcgtggaagcacaaattctgataaa
tataaggcagcagtgaagttcaaaaaagaaattctctgccccgagtggatatttgatagt
gcagaaaaaggctttgcacttccgacgaagggttataaagttaagtctctgaaggtatct
actccgattaaggaagatcgcagtattgcagatttcactcacctttcggatacatcacgt
ataagtgtaatgggcggtccaggacgcaattatcgaagtgagctcgcgactgtcaatgac
acaattagcagtggtgtaaatgaaacacaacaaaatgataatacttttgttgcaccggtt
acccgcgcaactacttccaaggatttgcagcgcgaagtgcatctgaaacagggcgctaca
gaacattatcgcctagtctatgaggaaatatgcccgaaacaagcaaaaaaggctggcaat
tttctagatggttgctgcatttatttaagtggttttcgacttgaagagagagaaaaatta
aataggattctaaatgttggaggggcaacgcgttatgatgttgtgaatgagaaaatcaca
cacatcattgtgggtcaactagatgacggagagctgcgctcttggaaacgtgatggcata
ctgacaaccgtaaacattgttcgacttgattggctacttcaaagcattaaattgaaacaa
gccgccagcgaaattgtataccgaatgtcactgccaacgactcgtgaacctgatgcgcct
tcgccttccagcaaaaagacattgcgctctatgaatcacagctttaaacacccagagaaa
ccgaaaaagaaactttttgaatcggaagaaaaagcgactgaatctgtaacatcacaagca
aaatctaccgatttgccattggaagaagaagagcaacatatcattgcccagtactcccaa
gaaaatgagcctgcggctgcagtaccagttggaacaacagcaatcaaatcaaacaacaat
ttagccgatcaaactcagtcggctcccatggcttcatcaactttaaaaccattggcaaat
attattccccaacctgcagcaaatccatctgcagataatgaaaattccacaaaaatgaac
actgaaattgattttgataatttagactttttcgatggaaagtctttgtatatcgatcgc
gcacattttcccgaagaattctactctcaaatgcttggtgagtgcgaagctgcgcatggg
gacatagtgccggccacattcgtagatatcgttgactatgcaattgtttcgtttgagcgt
acattgaatgtacacgacctacccgttaaggcacgacatattgtcactgatttgtatgtg
gaaaactgcatgaagcagaataaactggtacccatagaatatttccatcgccacgtcccg
cacacagctaattcgcaaccccttgtaggcatgaccattgttatttctacatacactgct
ttggaatatgatttcattgattccgttgcacaattgctgggtgccactgtcaatcgcgta
cttgctaaaaaagaacgccctcttttagtttgtccacgcgctgaaggttcaaaatatgag
ggagccatcaaatggggataccccatcgttacttctgcttggctggtgcaatgcgctgta
gaaggtaagaagttatcatttcagccgtacctagtcggcaatagtccaccagactttcct
gtatcgccaacgttgcgtgaaaagaacttacctaatccagcagcacgtgcgccttcgaat
gcttccgttgagcccatggacacgcaagaaaatgccgaaaatgatcttgctctcggagtg
actgcagcgaatgaattcacgccacttcgtaataaacgtgttaccgaattggcaggctcc
atttcgcgaaactctcgaccatcttccaatttaccgacgaataacactccagttacaccc
gactctcctcatacgcctacaaactcatatggccggtcgtcttgtaattttgaatatttg
gagggtgttgtagccgaattggacaacgaagatgcgcgtgcttgtctccgcgaactaatt
gaagagatgcgcaataatcagacgcccgagttggaacgcattcgccgacaggcatgcact
cccatcaatcgtaagctacccaccccaaaaggaatacctgacttttgcactactcccgaa
tttcaaaagcgaatggccgatgctttggaacggcgttggcgcttgccaactaaaaaacta
aagattgacacccctatcgatgagctgcgccgccgggtactgcgctctacatgcgaggct
ttaggcataccttttaccgatactgaagagacgcctacgactagtgccaaggctgctaag
aaagctttggccgcaacagctgaattatcagctttagccgctcagactccaaatacgcat
ttaaatccgacacgcaaatctaacgactcaaaggttgagtcacatcagcaactaccaggt
gtagtacctcgcgccattttcaccacaggtgtgaacagcaatcttaacacaagtgaacga
cgcaccacacgcgtttcggacggagatgcttttgtgccgatgactcaaagccctaccaga
ggcagtagcttaggtggtgaagaatctcgtatggtgcagcaagcaagttttggaaaaacg
acgatagactttgataaaattacttttgaaaatactgaaacagatacggtaacaaatgtg
gccacccaaaacattatcgcgcaagatcaaagcggaagtcgatcagcttctggtctggcc
acatcttcgcctgagcttcaaaaaattactgagtacctcaaaaattgtgagtctcgcaga
caaagcttgaaacaatcacgtcgtgcaacagggttaggaaatgcaagtagcggcgccgct
tctgatagtgttgagactatggtagataacatagacatcgacatgccggcatgtggcgca
gtggagactgaaacgcaacattacgtacagcccttcgaatcggagcagtttggtgttggc
actgaaaacatggtgggttggcgcgatcctgtcgagttcggcaaggaaaggcgctcaaag
gcatcgcccagtatgcaatacaaaggcataccgcgcttcagtatctcgtgcgtggacgag
gatgcgcgcaacgatataattaacaagatacatacattaggcggaacagtatctgagaat
cttgtcaattttgaccctgattgtacgcactttatctgtgaacgcccaaatcgcggggaa
aaaatgcttggttgtgtttcatcaggcaaatgggtgctcagtctcaagtatatagaagag
tgttacgcaaaagatgtttttgtcgacgaggaactctatgaatggggcaacagtaaagcg
ctaaatttgccacagctgactccagacgagcaacttttggcatcggcggtacatcgttgg
cgtaagaagctcaacgatactacatctgcagatggaagaaagttgggtgcctttagcggc
tttcgcgttatactacacattgctgaacgcaattcggaagctgtcaagaatgttttacgt
gctggacgtggcgatgtgatgaccgtgcagtcgccattcaatacgtgcagtgcggctaaa
aatgctacgcattgcttcgtggacgtgaagaaagcgccactgacgcgcagcgattacgat
tatctgcgtacgcttggtgttaagatttactcgcaaatgtacattaactcatatctaatg
tatggcgaagaagtagacgcagccaaatatgagatcaaaatccaatag
DBGET
integrated database retrieval system
