Rhagoletis zephyria (snowberry fruit fly): 108379088
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Entry
108379088 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108379088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108379088
03041 Spliceosome [BR:
rze03041
]
108379088
03036 Chromosome and associated proteins [BR:
rze03036
]
108379088
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108379088
Spliceosome [BR:
rze03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108379088
Complex B
108379088
Complex C
U2 SnRNP specific factors
108379088
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108379088
TFTC complex
108379088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Peptidase_S9_N
XPB_DRD
Motif
Other DBs
NCBI-GeneID:
108379088
NCBI-ProteinID:
XP_017490896
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MHLYNLTLQRASHVTIAVQGNFAGTKQQEIALAKGRILELVRPDPATGKVHSVLSVDIFG
TIRSMIAFRLTGGSKDYLVIGSDSGRIVILEYIPAKNCFDKVHQETYGKSGCRRIVPGQF
LAIDPKGRAVMLSAVEKQKLVYILNRDTAARLTISSPLEAHKSNTXVGFENPMFACLEMD
YEDADTDPTGEAAAQTTQSLTFYELDLGLNHVVRKYSESLEEHGNFLIAVPGGSDGPSGV
LICSENYITYKNFGDQPDIRCPIPRRQHDLDDPDRGMIFVCSASHKTKSMFFFLAQTEQG
DIFKITLEVEEDIVTELKIKYFDTVPVATSLCVLRTGFLFVAAEFGNHYLYQIVHLGDND
NEPEFSSSSPLNEGETFYFAPRTLKNLILVDELESLSPIMHSTVADVANEDTPQVLMACG
RGPRSTFRVLRHGLEVSEMAVSELPGNPNSVWTVRRRADDRFDSYIVVSFSNATLVLSIG
ETVEEITDSGFLGTTPTICCAQIGEDALVQVYPDGIRHIRADRRVNEWRAPGRKAIVRCA
LNAKQVVIALSGGEIVYFEMDASGQLNEYTERKDMNCEVICMALGDVPPGEQRCRFLATG
LADNTVRIISLDPAECLTPLSMQALPARAESLSIVQMGLNRSDEKRLFGGKLYLNVGLQN
GVHLRTVLDENTGDLSDTRTRYLGTRPIKLFQVVMQGKDSLLALSSRSWLCYYHQNRFHL
TPLSYEPLEYAAGFSSEQCPEGIVAISGNTLRILALENLGNVFNQQSFPLTYTPRKFAVH
PETGYIVLIESDHNALTAAEKAARRRAVANEMIAEAAATGTEEERLAASEAANAYLAEED
HLPEAVYGSPKPGADRWASLVRVLHPITGRTLELVSLEQDEAAVSLALCRFSSAAASKDA
GCYYVLVGVARRMRLLDRAHQGCEVLTFRFDADLEHLVLLHRTAVEDVPRAIAPFQGRVV
VGVGKLLRLYDLGKKKLLKKCENKSIANCISTVNTYGNRIFVSDIQESYFFLRYKAAENQ
LIVFADDSTPRWVTATAVLDYNTVASADKFGNLAIIRLPEDVNDDVDDDPTGLKSLWDRG
WLGGASQKAASIASFHLGDMVLSLVKATLIPGLSEALLYTTISGAVGVLVPFTSNEDRDF
FQHLEMHMRSENAPLCGRDHLAYRSVYFPVKHVIDGDLCEQYNSIEPGKQRSIAEELDRV
PAEISKKLEDMRTQYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtacaatctgacgttgcagcgggcgtcgcacgtcacgattgccgtgcagggc
aacttcgccggcaccaagcagcaggagatcgccctggcgaagggtcgcatcctcgagctg
gtccgccctgacccggccaccggcaaggtccactccgtcctctcggtggacatcttcggc
accattcgctcgatgatcgccttccgcctgacgggcggctccaaggactacctggtgatc
ggctccgactcggggcggatcgtcatcctcgagtacattccggcgaagaactgcttcgac
aaggtccaccaggagacgtacgggaagagcggctgccggcgcatcgtgcccggccagttc
ctcgccattgacccgaaggggcgcgcggtgatgctgagcgccgtggagaagcagaagctg
gtgtacattcttaatcgagacaccgccgcccgcctcaccatctcctcgccgctggaggcg
cacaagtcgaacacnnacgtcggcttcgaaaaccccatgttcgcctgcctcgagatggac
tacgaggacgcggacaccgatccgacgggcgaggcagcggcgcagaccacccagtcgctt
accttctacgagctggacctggggctgaaccacgtcgtgcggaagtacagcgagtcgctg
gaggagcacggcaacttcctcatcgccgtccccggcggctccgacggcccctccggcgtg
ctgatctgctccgagaactacatcacctacaagaactttggcgaccagccggacattcgg
tgtccgattccgcggcggcagcacgacctcgacgaccccgaccgcggcatgatcttcgtc
tgcagcgcctcgcacaagaccaagtcgatgttcttctttctggcgcagactgaacagggc
gacatcttcaagatcaccctcgaggtggaggaggacattgtgacggagctgaagatcaag
tactttgacacggtgccggtggccaccagcctctgcgtcctccgcaccggcttcctcttt
gtggcggcggagttcggcaaccactacctctaccagattgtccacctgggagacaacgac
aacgagccggagtttagcagcagcagtccgctgaacgagggcgagaccttctactttgcg
ccccgaaccctgaagaacctcatactggtggacgagctcgagtcgctgtcgccgatcatg
cactccaccgtggccgacgtcgccaacgaggacacgccgcaggtgttgatggcctgcggc
cgtggcccccgctccacctttcgcgtcctccgccacggcctggaggtgagcgagatggca
gtgagcgagctgccgggcaacccgaactcagtgtggacggtgcggcggcgggccgatgac
cgcttcgactcctacattgtcgtctccttcagcaacgccacgctggtgctctccattggc
gagaccgtggaggagatcaccgactcgggcttcctcggcacgacgcccaccatctgctgc
gcccagattggcgaggacgccctggtgcaggtctatccggacggcattcgccacattagg
gcggaccggcgggtgaacgagtggcgggcgccgggcaggaaggccatcgtccggtgcgcc
ctgaacgccaagcaggtggtgattgccctcagcggcggggagattgtctactttgagatg
gacgccagcgggcagctgaacgagtacaccgagcggaaggacatgaactgcgaggtgatc
tgcatggcgctgggcgatgtgccgcccggtgagcagcgctgccgatttctggccaccggg
ctggcggacaatacggtgaggattatctcgctggatccggcggaatgcctgacgccgctg
tcgatgcaggcgctgcccgcccgcgccgagtcgctctccatcgtgcagatgggcctcaac
cggtccgatgagaagcgcctctttggcgggaagctctacctgaacgtcggcctgcagaac
ggcgtccacctgcgcaccgtcctcgacgagaacaccggcgacctgtcggacacgcggacg
cgctacctcggcacaaggcccatcaagctctttcaggtggtgatgcaggggaaggactcg
ctgctggcgctgagcagtcgcagctggctgtgctactaccaccaaaatcgcttccacctg
acacccctttcctacgagccgctggagtacgccgccggcttcagctcggagcagtgtccg
gagggcattgtggccatcagcggtaatacgctgcgcattttggcgctggagaacctcggc
aacgtcttcaaccagcagtcctttccgctgacgtacacgccgcgcaagtttgccgtccac
ccggagacgggctacattgtgctgattgagtccgaccacaatgccctcacggcggcggag
aaggcggcgaggaggagggcggtggccaatgagatgattgctgaggcggcggccaccggg
acggaagaggagcggctggcggcttcggaggctgcgaacgcctacctcgcagaggaggac
cacctcccggaggcggtgtacggctcgccgaagcctggggcggaccggtgggcgtcgctg
gtgcgcgtcctgcacccgatcaccgggcggacgctggagctggtgtcgctggagcaggac
gaggcggcggtcagcctggccctctgccgcttcagcagcgccgccgccagcaaggacgcc
ggctgctactacgtgctggtaggcgtcgcccggcggatgcgcctgctggaccgggcgcac
cagggctgcgaggtcctgaccttccgcttcgacgccgacctcgagcacctggtgctgctg
caccggacggcggtggaggacgtgccgcgggcgattgccccctttcaggggcgggtggtg
gtgggcgtcggcaagctgctccgcctctacgacctgggcaagaagaagctgctgaagaag
tgcgagaacaaatcgattgcgaactgcatcagcacggtgaacacctacggcaatcgcatc
tttgtgagcgacattcaggagagctacttctttctgcggtacaaggcggcggagaatcag
ctcatagtctttgccgacgacagcacgccgcgctgggtgacggccacggcggtgctcgac
tacaacaccgtcgccagcgcggacaagtttggcaacctggcgatcatcaggctgccggag
gacgtcaacgacgacgtggacgacgaccccaccggcctcaagtcgctctgggaccgcggc
tggctgggcggcgcctcgcagaaggccgcctccattgcctcctttcacctcggagacatg
gtgctctccctggtgaaagcgactctcattccgggcctctccgaggcgctgctctacacg
acgatcagcggagcggtcggtgtcctggtccctttcacctcaaacgaagatcgggatttc
tttcagcacctggagatgcacatgcggtcggagaatgcaccgctgtgtgggcgtgaccac
ctcgcctaccgctcggtgtactttccggtgaagcacgtcattgatggcgatctgtgcgag
cagtacaattcgattgagccggggaagcagcggtccattgccgaggagttggatcgggtg
ccggcggagatttcaaagaagctcgaggacatgcggacgcagtatgccttctag
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integrated database retrieval system
