KEGG   Rhagoletis zephyria (snowberry fruit fly): 108379950
Entry
108379950         CDS       T08513                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013  Nucleocytoplasmic transport
rze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108379950
  09122 Translation
   03013 Nucleocytoplasmic transport
    108379950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rze03019]
    108379950
   03041 Spliceosome [BR:rze03041]
    108379950
Messenger RNA biogenesis [BR:rze03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108379950
Spliceosome [BR:rze03041]
 Complex C
  Other components
   EJC/TREX
    108379950
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108379950
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Tricorn_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 eIF2A Beta-prop_EML Beta-prop_HPS5 RMC1_N WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_WDR35_TULP_N NBCH_WD40 WDR90_beta-prop_4th PD40 CFAP251_N Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_SCAP WD40_RFWD3 TRM82_WD PAC11 Beta-prop_NUP159_NUP214 Beta-prop_ELP1_1st Beta-prop_DCAF12 B-prop_COPA_B_2nd Peptidase_S9_N DPPIV_N Beta-prop_WDR41 baeRF_family5
Other DBs
NCBI-GeneID: 108379950
NCBI-ProteinID: XP_017491812
LinkDB
Position
Unknown
AA seq 321 aa
MGQSHLNLEELRTYFKTHGKIREQKAHTSKVHSVGWSCDGRRLASGSFDKTVAVYTLERD
RVSKENTYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDIRAGKCSTVTNTKGENINI
TWSPDGKTIAVGNKEDLVTFIDTRTNKIRAEEQFNFEVNEIAWNNTSDMFFLTNGLGCVH
ILSYPSLELQHVLKAHPATCICIEFDPTGKYFATGSADALVSLWDANELACLRVLSRLDW
PVRTISFSHDGKLLASASEDLLIDIAHTETGEKVADVTVDAATFTVAWHPKQYLLAYACD
DKDNNDRRREAGNLKVFGFSE
NT seq 966 nt   +upstreamnt  +downstreamnt
atggggcaatcacacttaaatttggaggagctgcgaacctatttcaaaacccacggtaaa
attcgcgaacaaaaagcacacacatcaaaagtgcattctgttggttggagctgtgatggg
agacgcctggcatctggttcatttgacaaaactgtggcggtctatacactagaacgagat
cgtgtgagcaaggagaatacgtaccgcggccataccggatcggtggatcagctatgctgg
catgccacaaatcccgatctgttaagtacagctagtggtgataaaactgtacgtatatgg
gacatacgcgctggcaaatgttccaccgtgacaaatactaaaggcgaaaatataaacatc
acctggtcgcctgatggcaaaaccattgcggttggtaataaagaagacttggtaacattt
attgatactcgtacaaacaaaatacgagctgaggaacaattcaatttcgaggtaaacgaa
atagcttggaataatacgagtgatatgtttttcttgactaacggcttgggatgcgtgcat
atattaagttaccctagtctggaattgcagcacgttttaaaagctcacccagctacttgt
atttgcatagaatttgatcctaccggtaaatacttcgcaacgggttcagcggatgcactt
gtctcactgtgggacgcaaatgaactggcgtgcctgcgggtgctctcacgtttggattgg
cctgtacgcaccatttctttcagtcacgacggcaaacttttggcgtcggctagtgaagac
ttgctcatagatatagcgcatacagaaactggcgaaaaagttgcagatgtcactgtagat
gcagcaacttttacagtggcatggcatccgaagcaatatttacttgcctatgcttgtgac
gacaaagataataacgatcgaagacgggaagcgggcaatcttaaagtttttggattttct
gaataa

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