Rhagoletis zephyria (snowberry fruit fly): 108380082
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Entry
108380082 CDS
T08513
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108380082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108380082
03012 Translation factors [BR:
rze03012
]
108380082
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108380082
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108380082
Translation factors [BR:
rze03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108380082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_19
AAA_22
ResIII
SRP54
ABC_tran
PhoH
AAA_14
Rad17
DUF6883
FtsK_SpoIIIE
NPHP3_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
108380082
NCBI-ProteinID:
XP_017491939
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MERNPRERIRHPPGLRGRAIGLFYRNLSKRKRPKPETQAIRLGPCVSVPQTVLAKVEESL
RKFEQSCEDEQVLKDFEAQFRHLLCADFEEFILSTKSSNYELMNNELQNQRYKSELLAKE
RDPDFQQRYEQRLKLPAMKQNERILEAIKANQVLLIVGSTGCGKTTQVPQLILDDYIFNN
RGSQCHVVCTQPRRISAVTVAERVAYERLEKLGVSVGYQIRLESEMPRDSGSILYCTTGV
LLQKLQSDPLMSAVSAVIIDEIHERGVETDLLLALFKFILPHRPELKVILMSATVSEHEF
SAYFNNCCTINIEGTMFPVKVNYLEDIIQETGYTRFRNNPHEFARNKPRHQANQLDRQSA
ANFDYNAMIEPYLRHIRNQYDAQVLQALRCTDSEGCENLQFLEHLIFYICDTKPPGAILV
FLPGYDKISKLNTILQNPTSPVGQRYSRKIQVYPLHSMMPTMFQKNVFQPPPPGMRKVIL
STTVAETSVTIDDVVYVINSGRMKTNNYNVEANLQMLEETWVTKANTQQRKGRAGRVQPG
ICYNLFSRARERTMIDQIVPEILRCKLESTILNLKMLHVKDVHHFLSTLISPPDKQAIVN
GINLLKRINALDVEGTLTPLGMHLARLPVDPQIGKMLVMSALFRCLDPISSVAAGLSFKS
PFYVPLGKEKDVDRIRRHLSANQRSDHLMIDNVVLNYREALEDNCERDFCYNNFLSLGTL
QQLEQMKKQFASLLRASSFTDSGHCSAKSSNENSRNIPLLRAIIAAGLYPNMAFLSKVRR
TRNHVNAIHHLTTPEERRVNFHPCSVNSNEASFDSHYFVYFQKQKSSSLYLLDATMVFPM
ALIIFGDGVETGYTENKIFYISVGRTYFFKCDPGTAKVILELRKRLEWLMQKRALNPSPI
LPNSSEDYIVKAIQILLSLDDVYDYSDQYMSSDEEQN
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcaatcctagagagagaatacgccatccgcctggcctacgcggccgtgcgatt
ggcctcttttaccgtaatctatcgaagaggaagcgtcctaagccggaaacgcaagctatt
cgactgggaccgtgcgtgagtgtgccacaaactgtgctggcgaaggtggaagaaagctta
cggaaatttgagcaaagttgcgaagatgagcaagttttgaaagattttgaagcacaattt
cgacatttactgtgcgccgattttgaggaattcattttgagtacaaaatcgtccaactat
gaactgatgaacaatgaattacagaatcaacgctacaaatcggagcttttggccaaggaa
cgtgatccagactttcagcaacgatatgagcagcgcctcaaattgcccgccatgaagcaa
aatgaacgcatattggaagcgatcaaggcaaatcaagtattgctgatcgttggcagcacg
ggttgtggtaagactacgcaggtgccacaactaattttggatgattacatcttcaataat
cgtggctcacagtgtcatgtggtgtgcacgcagccgcgtcgtatttcggcggttacggtt
gctgagcgcgtggcctacgaaaggttggagaaattgggcgtatcggtgggctatcaaata
cgcttggaaagcgaaatgccgcgtgatagtggctccattttgtattgcaccacgggggtg
cttttgcaaaagttgcagtccgatccgctgatgagcgcagtgagcgcggtaattatcgac
gagatacacgaacgtggcgtggagaccgacttgttgttggcgttgttcaagtttatattg
ccacatcgacccgaattgaaggttatactcatgagtgctactgtttcagagcacgaattc
agcgcttacttcaataattgctgtacgataaacattgaaggcaccatgtttccggttaag
gtgaattaccttgaagatattatacaagaaactggttacacacgttttcgcaacaatcca
cacgagttcgcgaggaataagccacgacatcaagccaatcaacttgaccgccagagcgct
gcaaatttcgattacaacgcaatgattgaaccatatctgcgacatatcagaaaccaatac
gatgcacaggtgttacaggcattgcgttgtaccgactcggagggttgcgagaatctacaa
tttctagagcatttaattttctacatttgtgatacaaaaccacctggcgcgattttggtt
ttcttgccaggctacgataagatctccaaattgaataccatactgcaaaatcccacatca
ccggttggtcagcgttattcgcgtaagatacaagtgtatccgttgcattcgatgatgcca
accatgttccaaaagaatgtgttccaaccgccaccgcccggcatgcgcaaggttatactc
tccaccacagtggctgagacttccgtcacaattgacgatgttgtctatgtgattaacagc
ggacgcatgaagacgaataattataatgtggaagccaatttgcagatgctcgaagagact
tgggtgacaaaagccaatacacagcaacgcaaaggtcgtgctggtcgcgtgcaaccaggc
atttgctataatctctttagtcgcgcgcgtgagcgaacaatgatcgatcaaatagtgccc
gaaatattgcgctgcaaattggaatccacaatattaaatttgaaaatgttgcatgtaaaa
gatgtacatcactttttgagtacgctgatatcgccgcccgacaagcaggctattgtaaat
ggcattaatttgctgaaacgcatcaatgcgctggacgtcgaaggcacgttaacaccactg
ggcatgcatttggcacgtttgcccgtcgatccacaaattggcaaaatgcttgtaatgtcg
gcactgtttcgctgtctggatcccatcagttcggtagctgcgggactctcattcaagtcg
cccttttatgtaccgctcggcaaggagaaagatgttgatcgcatcagacgtcatctctcg
gccaaccagcgcagtgatcatctgatgatcgacaatgtggtgctcaattatcgtgaagca
ctggaggataattgtgaacgcgatttttgctataacaactttttaagtctcggcaccctg
caacagttggagcagatgaagaaacaatttgctagtttactacgcgcatccagcttcaca
gattctggtcattgcagtgccaaatcttcaaatgaaaattccaggaatattcctttatta
cgggccattatcgccgctggtctctacccgaatatggcatttttgagcaaggtgcgtcgc
actagaaatcacgttaatgccatacatcatctcaccacaccagaagagcgtcgcgtcaat
ttccacccctgctcggtgaatagcaatgaggcctcatttgattcgcactatttcgtctac
ttccaaaagcagaaatcgagtagtctttatctgctggatgctaccatggtctttcccatg
gccttaatcatatttggtgatggtgtcgagacgggctataccgaaaataaaatattttac
atttcagtaggacgcacttacttcttcaagtgtgaccccggaacagcgaaagtgatactg
gagctgcgcaaacgtttggaatggctgatgcagaagcgcgcgctaaatccatccccaatc
ctgcctaatagtagtgaggattacatcgttaaagcaattcaaattcttttatcgttggat
gatgtgtacgattatagcgatcaatatatgtcatccgatgaagagcaaaactga
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